Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
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Accession | GR:0101296 | ||||
Gene Symbol | DXS2 | ||||
Gene Name | 1-Deoxy-D-xylulose-5-phosphate synthase 2 | ||||
Synonyms (3) |
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E.C. Numbers (2) |
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Pathway Reactions (1) | DXS-RXN | ||||
Chromosome No. | 6 | ||||
Gene Type | CDS (Protein coding) | ||||
Has Phenotype | no | ||||
Description | Gene encodes for the enzyme 1-Deoxy-D-xylulose-5-phosphate synthase. It catalyzes the first step in the methylerythritol 4-phosphate (MEP) pathway by converting pyruvate and glyceraldehyde 3-phosphate (G3P) into 1-deoxy-D-xylulose 5-phosphate (DXP). The paralogs are DXS1 (GR:0101295) and DXS3 (GR:0101297). Its expression in seedlings was upregulated 2 folds in the UV light-illuminated conditions, compared to the non-illuminated etiolated seedlings. |
Protein |
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Nucleotide (DNA) |
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 6 | 2,249,560-2,255,640bp | View Comparative Map | |||
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Map Position [ View in Marker DB ] | |||||
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# | Map Set Name | Linkage Group | Start Position | Stop Position | CMap Feature Acc |
1 | Rice japonica MSU6 | Chr. 6 | 2249560 bp | 2255640 bp | grjp2009a-6-GR:0101296 |
Plant Structure | vascular leaf (PO:0009025) |
Cereal Plant Growth Stage | 1-4 leaf stage (GRO:0007142) |
Cellular Component | mitochondrion (GO:0005739) |
Molecular Function | 1-deoxy-D-xylulose-5-phosphate synthase activity (GO:0008661) |
Biological Process | terpenoid biosynthetic process (GO:0016114) |
Environment | abscisic acid regimen (EO:0007105), Magnaporthe grisea (EO:0007226), tissue culture growth media (EO:0007266), watering regimen (EO:0007383), unknown environment (EO:0007403) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
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chr6 | 2,249,560 | 2,255,640 | ~160K SNPs x 20 accessions (McNally 2... | 14 | Search for SNPs |
chr6 | 2,249,560 | 2,255,640 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
chr6 | 2,249,560 | 2,255,640 | Huang X, et al, Nat Genetics 2010 Nov... | 11 | Search for SNPs |
chr6 | 2,249,560 | 2,255,640 | RiceDiversity 44K SNP assay, 34 trait... | 11 | Search for SNPs |
chr6 | 2,249,560 | 2,255,640 | RiceDiversity 44K SNP assay, 34 trait... | 1 | Search for SNPs |