Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||||
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Accession | GR:0101181 | ||||||||
Gene Symbol | Raffinose synthase 1 | ||||||||
Gene Name | Rfs1 | ||||||||
Synonyms (7) |
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E.C. Numbers (1) | 2.4.1.82 | ||||||||
Pathway Reactions (1) | Galactinol--sucrose galactosyltransferase | ||||||||
Chromosome No. | 1 | ||||||||
Gene Type | CDS (Protein coding) | ||||||||
Has Phenotype | no | ||||||||
Description | The gene encodes for raffinose synthase that catalyses the sucrose into raffinose. The enzyme was specific for galactinol and p-nitrophenyl-alpha-D: -galactoside as galactosyl donors, and sucrose, lactose, 4-beta-galactobiose, N-acetyl-D: -lactosamine, trehalose and lacto-N-biose were recognized as galactosyl acceptors. |
Protein |
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Nucleotide (DNA) |
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 1 | 3,597,418-3,601,211bp | View Comparative Map | |||
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Map Position [ View in Marker DB ] | |||||
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# | Map Set Name | Linkage Group | Start Position | Stop Position | CMap Feature Acc |
1 | Rice japonica MSU6 | Chr. 1 | 3597418 bp | 3601211 bp | grjp2009a-1-GR:0101181 |
Plant Structure | shoot system (PO:0009006) |
Plant Growth and Development Stage | LP.03 three leaves visible stage (PO:0007106) |
Cellular Component | plastid (GO:0009536) |
Molecular Function | galactinol-sucrose galactosyltransferase activity (GO:0047274) |
Biological Process | galactose metabolic process (GO:0006012) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
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chr1 | 3,597,418 | 3,601,211 | ~160K SNPs x 20 accessions (McNally 2... | 4 | Search for SNPs |
chr1 | 3,597,418 | 3,601,211 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
chr1 | 3,597,418 | 3,601,211 | Huang X, et al, Nat Genetics 2010 Nov... | 5 | Search for SNPs |
chr1 | 3,597,418 | 3,601,211 | RiceDiversity 44K SNP assay, 34 trait... | 5 | Search for SNPs |
chr1 | 3,597,418 | 3,601,211 | RiceDiversity 44K SNP assay, 34 trait... | 0 |