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Oryza sativa gene "sgr" (GR:0061191) | Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||
|---|---|---|---|---|---|---|---|
| Accession | GR:0061191 | ||||||
| Gene Symbol | sgr | ||||||
| Gene Name | stay green | ||||||
| Synonyms (6) |
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| E.C. Numbers (0) | |||||||
| Pathway Reactions (0) | |||||||
| Chromosome No. | 9 | ||||||
| Gene Type | CDS (Protein coding) | ||||||
| Has Phenotype | yes | ||||||
| Description | The stay green gene is strongly expressed in senescing leaves. It is involved in activating translational or posttranslational regulation of chlorophyll degrading enzymes. The plant with mutant form displayed stay green phenotype. These plants had higher chlorophyll content in the leaves and had stable LCHI and LHCII during leaf senescence. |
Alleles (1) Germplasm (1) Sequences (3) | Protein |
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| Nucleotide (DNA) |
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Gene-To-Gene Interactions (0)
Gene Interactions (0)
Map Positions (3) | Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 9 | 20,868,236-20,870,627bp | View Comparative Map | |||
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Genetic | IGCN 1998 | BNL6.32 | 9 | 131.1-134.7cM | View Comparative Map | |||
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| JRGP RFLP 2000 | BNL6.32 | 9 | 80-84.2cM | View Comparative Map | ||||
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Gene Map Positions (3) | Map Position [ View in Marker DB ] | |||||
|---|---|---|---|---|---|
| # | Map Set Name | Linkage Group | Start Position | Stop Position | CMap Feature Acc |
| 1 | IGCN 1998 | 9 | 131.1 cM | 134.7 cM | igcn-1998-9-ip1 |
| 2 | JRGP RFLP 2000 | 9 | 80 cM | 84.2 cM | jrgp-2000-9-ip21 |
| 3 | Rice japonica MSU6 | Chr. 9 | 20868236 bp | 20870627 bp | grjp2009a-9-GR:0061191 |
Associated Ontologies (14) | Trait | leaf senescence (TO:0000249), chlorophyll ratio (TO:0000298), leaf color (TO:0000326), stay green trait (TO:0002712) |
| Plant Structure | vascular leaf (PO:0009025) |
| Plant Growth and Development Stage | 4 leaf senescence stage (PO:0001054), sporophyte senescent stage (PO:0007017) |
| Cereal Plant Growth Stage | B-reproductive stage (GRO:0007140) |
| Cellular Component | plastid (GO:0009536) |
| Biological Process | PSII associated light-harvesting complex II catabolic process (GO:0010304), chlorophyll catabolic process (GO:0015996) |
| Environment | Magnaporthe grisea (EO:0007226), tissue culture growth media (EO:0007266), unknown environment (EO:0007403) |
Associated QTL (0)
Database Cross-References (0)
Literature (4) Images (0)
SNPs (6) | Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr9 | 20,868,236 | 20,870,627 | ~160K SNPs x 20 accessions (McNally 2... | 0 | |
| chr9 | 20,868,236 | 20,870,627 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
| chr9 | 20,868,236 | 20,870,627 | Huang X, et al, Nat Genetics 2010 Nov... | 3 | Search for SNPs |
| chr9 | 20,868,236 | 20,870,627 | RiceDiversity 44K SNP assay, 34 trait... | 3 | Search for SNPs |
| chr9 | 20,868,236 | 20,870,627 | RiceDiversity 44K SNP assay, 34 trait... | 0 |
