Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||||||||
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Accession | GR:0061011 | ||||||||||||
Gene Symbol | XA1 | ||||||||||||
Gene Name | XANTHOMONAS CAMPESTRIS PV. ORYZAE RESISTANCE 1 | ||||||||||||
Synonyms (11) |
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E.C. Numbers (0) | |||||||||||||
Pathway Reactions (1) | Nucleoside-triphosphatase | ||||||||||||
Chromosome No. | 4 | ||||||||||||
Gene Type | CDS (Protein coding) | ||||||||||||
Has Phenotype | not curated | ||||||||||||
Description | under curation |
Protein |
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Nucleotide (DNA) |
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 4 | 31,452,992-31,459,688bp | View Comparative Map | |||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | Hokkaido Morphological 2000 | BNL6.32 | 4 | 68-68cM | View Comparative Map | |||
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JRGP RFLP 2000 | BNL6.32 | 4 | 108.2-108.2cM | View Comparative Map | ||||
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QTL | JKU Aso/IR24 QTL 1996 | BNL6.32 | 4 | 12.2-12.2cM | View Comparative Map | |||
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Map Position [ View in Marker DB ] | |||||
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# | Map Set Name | Linkage Group | Start Position | Stop Position | CMap Feature Acc |
1 | JRGP RFLP 2000 | 4 | 108.2 cM | 108.2 cM | jrgp-2000-4-ip11 |
2 | Hokkaido Morphological 2000 | 4 | 68 cM | 68 cM | morph-2000-4-13 |
3 | JKU Aso/IR24 QTL 1996 | 4 | 12.2 cM | 12.2 cM | tsh1996a-140 |
4 | Rice japonica MSU6 | Chr. 4 | 31452992 bp | 31459688 bp | grjp2009a-4-GR:0061011 |
Trait | rice bacterial blight disease resistance (TO:0000175) |
Plant Structure | vascular leaf (PO:0009025) |
Molecular Function | DNA binding (GO:0003677), ATP binding (GO:0005524) |
Biological Process | apoptotic process (GO:0006915), defense response (GO:0006952) |
Environment | unknown environment (EO:0007403) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
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chr4 | 31,452,992 | 31,459,688 | ~160K SNPs x 20 accessions (McNally 2... | 6 | Search for SNPs |
chr4 | 31,452,992 | 31,459,688 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
chr4 | 31,452,992 | 31,459,688 | Huang X, et al, Nat Genetics 2010 Nov... | 28 | Search for SNPs |
chr4 | 31,452,992 | 31,459,688 | RiceDiversity 44K SNP assay, 34 trait... | 28 | Search for SNPs |
chr4 | 31,452,992 | 31,459,688 | RiceDiversity 44K SNP assay, 34 trait... | 3 | Search for SNPs |