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Browse Ontology Database by:
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Find:
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Gene Symbol & Name
Gene Accession
Chromosome No.
TO:Trait
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PO:Plant Growth and Development Stage
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E.g.,
d1
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dwarf-1
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GR:0060184
,
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Oryza sativa gene "RF1" (GR:0060740)
Species
Oryza sativa (Rice)
[
GR_tax:013681
]
Accession
GR:0060740
Gene Symbol
RF1
Gene Name
RESTORATION OF FERTILITY 1
Synonyms (4)
Rf1
Pollen fertility restoration-1
Rf1
Pollen fertility restoration-1
E.C. Numbers (0)
Pathway Reactions (0)
Chromosome No.
10
Gene Type
Not sequenced
Has Phenotype
yes
Description
Restores pollen fertility. The fertility restoration is gametophytically determined or sporophytically determined.
Alleles (0)
Germplasm (0)
Sequences (2)
Nucleotide (DNA)
GenBank Nucleotide:
AB110443
,
AB110444
Gene-To-Gene Interactions (0)
Gene Interactions (0)
Map Positions (2)
Oryza sativa (2)
Map Type
Map Set
Name
Map
Position
Ext. Links
Genetic
Hokkaido Morphological 2000
BNL6.32
10
16.5-16.5cM
View Comparative Map
Details
Date Created
Mapping Method:
Comments
CMap Preview
JRGP RFLP 2000
BNL6.32
10
39.6-67.6cM
View Comparative Map
Details
Date Created
Mapping Method:
Comments
CMap Preview
Gene Map Positions (2)
Map Position
[ View in Marker DB ]
#
Map Set Name
Linkage Group
Start Position
Stop Position
CMap Feature Acc
1
JRGP RFLP 2000
10
39.6 cM
67.6 cM
jrgp-2000-10-ip8
2
Hokkaido Morphological 2000
10
16.5 cM
16.5 cM
morph-2000-10-3
Associated Ontologies (4)
Trait
male fertility restoration trait
(TO:0000308)
Plant Structure
anther
(PO:0009066)
Plant Growth and Development Stage
whole plant flowering stage
(PO:0007016)
Biological Process
multicellular organismal development
(GO:0007275)
Associated QTL (0)
Database Cross-References (1)
Oryzabase:
885
Literature (14)
Shinjyo-C., "Cytoplasmic-genetic male sterility in cultivated rice, Oryza sativa L",
Japanese journal of genetics
, 1969, vol. 44(3), pp. 149-156
Shinjyo-C., "Genetical studies of cytoplasmic male sterility and fertility restoration in rice, Oryza sativa L",
Sci Bull Coll Agr Univ Ryukyus
, 1975, vol. 22, pp. 1-57
Shinjyo-C., "Identification of male sterile cytoplasms and fertility genes derived from wild species",
Exploitation and Identification of Rice Gene Resources N Iwata, ed (Report of Grant-in-Aid for Scientific Research)
, 1990, pp. 106-111
Fukuta-Y, Yano-M, Fukui-K., "Linkage analysis of the restorer gene (Rf-1) in rice using restriction fragment length polymorphism markers",
Japanese Journal of Breeding
, 1992, vol. 42(Suppl.1), pp. 164-165
Yu-Z-H, Kinoshita-T, Sato-S, Tanksley-S-D., "Morphological and RFLP markers are associated in rice",
RGN
, 1992, vol. 9, pp. 116-118
Causse-M-A, Fulton-T-M, Cho-Y-G, Ahn-S-N, Chunwongse-J, Wu-K, Xiao-J, Yu-Z, Ronald-P-C, Harrington-S-E, Second-G, McCouch-S-R, Tanksley-S-D., "Saturated molecular map of the rice genome based on an interspecific backcross population",
Genetics
, 1994, vol. 138, pp. 1251-1274
Teng-L-S, Shen-Z-T., "Inheritance of fertility restoration for cytoplasmic male sterility in rice",
Rice Genetics Newsletter
, 1994, vol. 11, pp. 95-97
Yu-Z-H, McCouch-S-R, Kinoshita-T, Sato-S, Tanksley-S-D., "Association of morphological and RFLP markers in rice (Oryza sativa L.)",
Genome ( National Research Council Canada )
, 1995, vol. 38, pp. 566-574
Akagi-H, Yokozeki-Y, Inagaki-A, Nakamura-A, Fujimura-T., "A codominant DNA marker closely linked to the rice nuclear restorer gene, Rf-1, identified with inter-SSR fingerprinting",
Genome ( National Research Council Canada )
, 1996, vol. 39, pp. 1205-1209
Yokozeki-Y, Nakamura-A, Inagaki-A, Ichikawa-N, Koshino-Y, Akagi-H, Shimada-H, Tsuchiya-T, Shinjyo-C, Fujimura-T., "DNA markers of a fertility restoration gene Rf-1 in rice, Oryza sativa L",
Breed Sci
, 1996, vol. 46(Suppl. 1), p. 73
Ichikawa-N, Kishimoto-N, Inagaki-A, Nakamura-A, Koshino-Y, Yokozeki-Y, Oka-M, Samoto-S, Akagi-H, Higo-K, Shinjyo-C, Fujimura-T, Shimada-H., "A rapid PCR-aided selection of a rice line containg the Rf-1 gene which is involved in restoration of the cytoplasmic male sterility",
Mol Breed
, 1997, vol. 3, pp. 195-202
Huang-Q, He-Y, Jin-R, Huang-H, Zhu-Y., "Tagging of the restorer gene for rice HL-type CMS using microsatellite markers",
Rice Genetics Newslett.
, 1999, vol. 16, pp. 75-77
Liang-G, Yan-C, Zhai-W, Zhu-L, Gu-M., "RFLP mapping of a fertility restorer gene for rice (O. sativa L.). ‘BT’ type CMS line",
Chinese Rice Res. Newslett.
, 2000, vol. 8, p. 2
Akagi-H, Nakamura-A, Yokozeki-Misono-Y, Inagaki-A, Takahashi-H, Mori-K, Fujimura-T., "Positional cloning of the rice RF-1 gene, a restorer of BT-type cytoplasmic male sterility that encodes a mitochondria-targeting PPR protein",
Theor. Appl. Genet.
, 2004, vol. 108, pp. 1449-1457
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SNPs (0)