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Oryza sativa gene "PH" (GR:0060606) | Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||
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| Accession | GR:0060606 | ||||||
| Gene Symbol | PH | ||||||
| Gene Name | PHENOL STAINING | ||||||
| Synonyms (6) |
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| E.C. Numbers (0) | |||||||
| Pathway Reactions (0) | |||||||
| Chromosome No. | 4 | ||||||
| Gene Type | Not sequenced | ||||||
| Has Phenotype | yes | ||||||
| Description | Grains and hulls stain dark violet with phenol solution; usually indica varieties show that reaction. Black hull color is due to the complementary genes, Ph, Bh1 and Bh2. |
Alleles (1) 
Sequences (0)
Gene-To-Gene Interactions (0)
Gene Interactions (0)
Map Positions (10) | Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Genetic | Cornell SSR 2001 | BNL6.32 | 4 | 129.5-141.3cM | View Comparative Map | |||
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| Hokkaido Morphological 2000 | BNL6.32 | 4 | 74-74cM | View Comparative Map | ||||
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| IGCN 1998 | BNL6.32 | 4 | 49.6-49.6cM | View Comparative Map | ||||
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| JRGP RFLP 2000 | BNL6.32 | 4 | 108.2-108.8cM | View Comparative Map | ||||
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| KRGRP 1998 | BNL6.32 | 4 | 118.3-118.3cM | View Comparative Map | ||||
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| QTL | IGCN ZYQ18/JX17 DH QTL 1998 | BNL6.32 | 4 | 49.6-49.6cM | View Comparative Map | |||
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| IRRI Lem/Teq RI QTL 2001 | BNL6.32 | 4 | 151.6-151.6cM | View Comparative Map | ||||
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| JRGP Nip/Kas F2 QTL 2000 | BNL6.32 | 4 | 108.5-108.5cM | View Comparative Map | ||||
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| KRGRP Mil23/Gih QTL 1998 | BNL6.32 | 4 | 118.3-118.3cM | View Comparative Map | ||||
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Genetic | Cornell RFLP 2001 | BNL6.32 | 4 | 69.3-81.1cM | View Comparative Map | |||
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Gene Map Positions (10) | Map Position [ View in Marker DB ] | |||||
|---|---|---|---|---|---|
| # | Map Set Name | Linkage Group | Start Position | Stop Position | CMap Feature Acc |
| 1 | Cornell RFLP 2001 | 4 | 69.3 cM | 81.1 cM | cu-sl-2001-4-ip4 |
| 2 | IGCN 1998 | 4 | 49.6 cM | 49.6 cM | igcn-1998-4-7 |
| 3 | Hokkaido Morphological 2000 | 4 | 74 cM | 74 cM | morph-2000-4-14 |
| 4 | JRGP RFLP 2000 | 4 | 108.2 cM | 108.8 cM | jrgp-2000-4-ip1 |
| 5 | Cornell SSR 2001 | 4 | 129.5 cM | 141.3 cM | cu-dh-2001-4-ip2 |
| 6 | KRGRP 1998 | 4 | 118.3 cM | 118.3 cM | krgrp-1998-4-31 |
| 7 | KRGRP Mil23/Gih QTL 1998 | 4 | 118.3 cM | 118.3 cM | chy1998a-212 |
| 8 | IRRI Lem/Teq RI QTL 2001 | 4 | 151.6 cM | 151.6 cM | liz2001a-100 |
| 9 | JRGP Nip/Kas F2 QTL 2000 | 4 | 108.5 cM | 108.5 cM | rgp2000a-1396 |
| 10 | IGCN ZYQ18/JX17 DH QTL 1998 | 4 | 49.6 cM | 49.6 cM | shl1998a-145 |
Associated Ontologies (6) | Trait | phenol reaction (TO:0000062) |
| Plant Structure | seed coat (PO:0009088), endosperm (PO:0009089) |
| Plant Growth and Development Stage | whole plant fruit ripening complete stage (PO:0007038) |
| Cereal Plant Growth Stage | 09-mature grain stage (GRO:0007045) |
| Biological Process | carbohydrate biosynthetic process (GO:0016051) |
Associated QTL (0)
Database Cross-References (1) Literature (20) Images (1) 1.
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1. Straw color in normal type (top row) and purple color stained with phenol solution (bottom row). |
SNPs (0)
