Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
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Accession | GR:0020064 | ||||
Gene Symbol | CPS1 | ||||
Gene Name | ent-copalyl diphosphate synthase 1 | ||||
Synonyms (4) |
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E.C. Numbers (1) | 5.5.1.13 | ||||
Pathway Reactions (1) | ent-copalyl diphosphate synthase | ||||
Chromosome No. | 2 | ||||
Gene Type | CDS (Protein coding) | ||||
Has Phenotype | yes | ||||
Description | The gene encodes for the enzyme ent-copalyl diphosphate synthases which converts trans-geranylgeranyl diphosphate (GGDP) into ent-copalyl diphosphate (ent-CDP). Gibberellin mutants are associated with dwarfism. It has a paralog CPS2 (GR:0020065), which also encodes for the enzyme ent-copalyl diphosphate synthase. According to Sakamoto et al. (2004), CPS2 (OsCYC2) is involved in phytoalexin biosynthesis and CPS1 is involved in Gibberellic Acid (GA) biosynthesis. |
Protein |
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Nucleotide (DNA) |
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 2 | 10,273,716-10,283,725bp | View Comparative Map | |||
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Map Position [ View in Marker DB ] | |||||
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# | Map Set Name | Linkage Group | Start Position | Stop Position | CMap Feature Acc |
1 | Rice japonica MSU6 | Chr. 2 | 10273716 bp | 10283725 bp | grjp2009a-2-GR:0020064 |
Trait | growth and development trait (TO:0000357), enzyme activity trait (TO:0000599) |
Plant Growth and Development Stage | whole plant development stage (PO:0007033), leaf production stage (PO:0007133), sporophyte vegetative stage (PO:0007134) |
Cereal Plant Growth Stage | rice growth stage (GRO:0007040), 02-seedling (GRO:0007047), A-vegetative stage (GRO:0007139) |
Cellular Component | plastid (GO:0009536) |
Molecular Function | ent-copalyl diphosphate synthase activity (GO:0009905) |
Biological Process | metabolic process (GO:0008152), diterpene phytoalexin precursor biosynthetic process pathway (GO:0051504) |
Environment | laboratory study (EO:0007255), unknown environment (EO:0007403) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
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chr2 | 10,273,716 | 10,283,725 | ~160K SNPs x 20 accessions (McNally 2... | 7 | Search for SNPs |
chr2 | 10,273,716 | 10,283,725 | '1536 chip' - 1311 SNPs x 395 rice ac... | 1 | Search for SNPs |
chr2 | 10,273,716 | 10,283,725 | Huang X, et al, Nat Genetics 2010 Nov... | 2 | Search for SNPs |
chr2 | 10,273,716 | 10,283,725 | RiceDiversity 44K SNP assay, 34 trait... | 2 | Search for SNPs |
chr2 | 10,273,716 | 10,283,725 | RiceDiversity 44K SNP assay, 34 trait... | 4 | Search for SNPs |