Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
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Accession | GR:0020010 | ||||
Gene Symbol | iaa6 | ||||
Gene Name | indoleacetic acid 6 | ||||
Synonyms (4) |
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E.C. Numbers (0) | |||||
Pathway Reactions (2) |
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Chromosome No. | 1 | ||||
Gene Type | CDS (Protein coding) | ||||
Has Phenotype | no | ||||
Description | Early auxin responsive gene. Aux/IAA genes encode short-lived transcriptional factors that act to repress the expression of early auxin response genes when auxin concentrations are low. | ||||
Curator Comment | Relative mRNA levels of iaa6 are highest in roots and lowest in green shoots. There is little change in the levels of mRNA levels when coleoptile segments of 3-day-old etiolated seedlings are treated with 30 micro mols of 2,4-D in comparison to auxin depleted controls. |
Protein |
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Nucleotide (DNA) |
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 1 | 30,974,721-30,978,726bp | View Comparative Map | |||
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Map Position [ View in Marker DB ] | |||||
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# | Map Set Name | Linkage Group | Start Position | Stop Position | CMap Feature Acc |
1 | Rice japonica MSU6 | Chr. 1 | 30974721 bp | 30978726 bp | grjp2009a-1-GR:0020010 |
Plant Structure | coleoptile (PO:0020033) |
Plant Growth and Development Stage | leaf production stage (PO:0007133) |
Cereal Plant Growth Stage | 02-seedling (GRO:0007047) |
Cellular Component | nucleus (GO:0005634) |
Molecular Function | protein dimerization activity (GO:0046983) |
Biological Process | regulation of translation (GO:0006417), response to auxin stimulus (GO:0009733), GO:0045449 (GO:0045449) |
Environment | sodium chloride regimen (EO:0007048), Magnaporthe grisea (EO:0007226), laboratory study (EO:0007255), continuous dark (no light) regimen (EO:0007270), unknown environment (EO:0007403) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
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chr1 | 30,974,721 | 30,978,726 | ~160K SNPs x 20 accessions (McNally 2... | 3 | Search for SNPs |
chr1 | 30,974,721 | 30,978,726 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
chr1 | 30,974,721 | 30,978,726 | Huang X, et al, Nat Genetics 2010 Nov... | 5 | Search for SNPs |
chr1 | 30,974,721 | 30,978,726 | RiceDiversity 44K SNP assay, 34 trait... | 5 | Search for SNPs |
chr1 | 30,974,721 | 30,978,726 | RiceDiversity 44K SNP assay, 34 trait... | 0 |