![[Home Page]](/images/icons/gramene_logo180new.jpg "[Home Page]"){kind=icon}
Gene Home |
Search |
|
Submit |
Help |
Tutorial |
FAQ | Release Notes
Oryza sativa gene "iaa2" (GR:0020006) | Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
|---|---|---|---|---|---|
| Accession | GR:0020006 | ||||
| Gene Symbol | iaa2 | ||||
| Gene Name | indoleacetic acid 2 | ||||
| Synonyms (4) |
|
||||
| E.C. Numbers (0) | |||||
| Pathway Reactions (2) |
|
||||
| Chromosome No. | 1 | ||||
| Gene Type | CDS (Protein coding) | ||||
| Has Phenotype | no | ||||
| Description | Early auxin responsive gene. Aux/IAA genes encode short-lived transcriptional factors that act to repress the expression of early auxin response genes when auxin concentrations are low. | ||||
| Curator Comment | The highest relative mRNA levels of iaa2 are found in the flowers and callus. mRNA levels increase by around 50% when coleoptile segments of 3-day-old etiolated seedlings are treated with 30 micro mols 2,4-D in comparison to auxin. |
Alleles (1) Germplasm (1) Sequences (5) | Protein |
|
||||||
|---|---|---|---|---|---|---|---|
| Nucleotide (DNA) |
|
Gene-To-Gene Interactions (0)
Gene Interactions (0)
Map Positions (1) | Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 1 | 4,815,845-4,817,962bp | View Comparative Map | |||
|
||||||||
Gene Map Positions (1) | Map Position [ View in Marker DB ] | |||||
|---|---|---|---|---|---|
| # | Map Set Name | Linkage Group | Start Position | Stop Position | CMap Feature Acc |
| 1 | Rice japonica MSU6 | Chr. 1 | 4815845 bp | 4817962 bp | grjp2009a-1-GR:0020006 |
Associated Ontologies (7) | Plant Structure | coleoptile (PO:0020033) |
| Plant Growth and Development Stage | leaf production stage (PO:0007133) |
| Cereal Plant Growth Stage | 02-seedling (GRO:0007047) |
| Cellular Component | intracellular (GO:0005622) |
| Biological Process | regulation of translation (GO:0006417), response to auxin stimulus (GO:0009733) |
| Environment | laboratory study (EO:0007255) |
Associated QTL (0)
Database Cross-References (0)
Literature (2) Images (0)
SNPs (12) | Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr1 | 4,815,845 | 4,817,962 | ~160K SNPs x 20 accessions (McNally 2... | 7 | Search for SNPs |
| chr1 | 4,815,845 | 4,817,962 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
| chr1 | 4,815,845 | 4,817,962 | Huang X, et al, Nat Genetics 2010 Nov... | 2 | Search for SNPs |
| chr1 | 4,815,845 | 4,817,962 | RiceDiversity 44K SNP assay, 34 trait... | 2 | Search for SNPs |
| chr1 | 4,815,845 | 4,817,962 | RiceDiversity 44K SNP assay, 34 trait... | 1 | Search for SNPs |
