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Browse Ontology Database by:
Trait
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Find:
In:
Gene Symbol & Name
Gene Accession
Chromosome No.
TO:Trait
PO:Plant Structure
PO:Plant Growth and Development Stage
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Type:
Not sequenced
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Aegilops
Aegilops x Triticum
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All Species
With Phenotype
E.g.,
d1
,
dwarf-1
,
GR:0060184
,
flower*
,
*tillering stage*
Or
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Oryza sativa gene "XA4" (GR:0061014)
Species
Oryza sativa (Rice)
[
GR_tax:013681
]
Accession
GR:0061014
Gene Symbol
XA4
Gene Name
XANTHOMONAS CAMPESTRIS PV. ORYZAE RESISTANCE 4
Synonyms (8)
Xa4
Xanthomonas campestris pv. oryzae resistance-4
Xa4-a
RXa4
Xa4
Xanthomonas oryzae pv. oryzae resistance-4
Xa4
Xanthomonas oryzae pv. oryzae resistance-4
E.C. Numbers (0)
Pathway Reactions (0)
Chromosome No.
11
Gene Type
Not sequenced
Has Phenotype
yes
Description
under curation
Alleles (0)
Germplasm (0)
Sequences (0)
Gene-To-Gene Interactions (0)
Gene Interactions (0)
Map Positions (1)
Oryza sativa (1)
Map Type
Map Set
Name
Map
Position
Ext. Links
Genetic
JRGP RFLP 2000
BNL6.32
11
110.4-113.8cM
View Comparative Map
Details
Date Created
Mapping Method:
Comments
CMap Preview
Gene Map Positions (1)
Map Position
[ View in Marker DB ]
#
Map Set Name
Linkage Group
Start Position
Stop Position
CMap Feature Acc
1
JRGP RFLP 2000
11
110.4 cM
113.8 cM
jrgp-2000-11-ip11
Associated Ontologies (1)
Trait
rice bacterial blight disease resistance
(TO:0000175)
Associated QTL (2)
Species
Accession
Trait Symbol
Trait Name
Evidence
Oryza sativa
AQBT023
BBRS
bacterial blight disease resistance
Li-Z-K et al., 1999
(
IAGP
)
Oryza sativa
AQBT024
BBRS
bacterial blight disease resistance
Li-Z-K et al., 1999
(
IAGP
)
Database Cross-References (1)
Oryzabase:
920
Literature (53)
Sakaguchi-S., "Linkage studies on the resistance to bacterial leaf bright, Xanthomonas oryzae (Uyeda et Ishiyama) Dowson, in rice",
Bull Nat Inst Agr Sci Ser
, 1967, vol. D16, pp. 1-18
Ezuka-A, Watanabe-Y, Horino-O., "Studies of resistance varieties to Xanthomonas oryzae (rice bacterial blight). 2. Resistance of Wase Aikoku 3. group rice varieties",
Ann. Phytopathol. Soc. Japan
, 1970, vol. 36, pp. 174-175
Ezuka-A, Horino-O, Toriyama-K, Shinoda-H, Morinaka-T., "Inheritance of resistance of rice variety Wase Aikoku 3 to Xanthomonas oryzae",
Bull Tokai-Kinki Agr Exp Stn
, 1975, vol. 28, pp. 124-130
Librojo-V, Kauffman-H-E, Khush-G-S., "Genetic analysis of bacteral blight resistance in four varieties of rice",
Sabrao J.
, 1976, vol. 8, pp. 105-110
Khush-G-S., "Disease and insect resistance in rice",
Adv Agron
, 1977, vol. 29, pp. 265-341
Nagaraju-M, Choudhary-D, Rao-M-J-B., "Genetics of resistance to bacterial leaf blight in rice",
Sabrao J.
, 1977, vol. 9, pp. 21-27
Petpisit-V, Khush-G-S, Kauffman-H-E., "Inheritance of resistance to bacterial blight in rice",
Crop Science
, 1977, vol. 17(4), pp. 551-554
Sujadi-S., "Studies on linkage relations of genes controlling disease and insect resistance and nature of endosperm in rice",
Euphytica
, 1977, vol. 26(2), pp. 337-342
Ogawa-T, Morinaka-T, Fujii-K, Kimura-T., "Inheritance of resistance of rice varieties Kogyoku and Java 14 to bacterial group V of Xanthomonas oryzae",
Ann Phytopath Soc Japan
, 1978, vol. 44(2), pp. 137-141
Sidhu-G-S, Khush-G-S, Mew-T-W., "Genetic analysis of bacterial blight resistance in seventy-four cultivars of rice, Oryza sativa L",
Theoretical and applied genetics
, 1978, vol. 53, pp. 105-111
Sidhu-G-S, Khush-G-S., "Dominance reversal of a bacterial blight resistance gene in some rice cultivars",
Phytopathology
, 1978, vol. 68(3), pp. 461-463
Sidhu-G-S, Khush-G-S., "Linkage relationship of some genes for disease and insect resistance and semidwarf stature in rice",
Euphytica
, 1979, vol. 28(2), pp. 233-237
Singh-R-J, Khush-G-S, Mew-T-W., "A new gene for resistance to bacterial blight in rice",
Crop Science
, 1983, vol. 23(3), pp. 558-560
Sur-S-C, Khush-G-S., "Chromosomal location of Xa-4 gene",
Rice Genetics Newsletter
, 1984, vol. 1, pp. 98-98
Ogawa-T, Yamamoto-T, Khush-G-S, Mew-T-W., "The relationship between genes Xa-3 and Xa-6 for resistance to rice bacterial blight",
Rice Genetics Newsletter
, 1986, vol. 3, pp. 79-80
Ogawa-T, Tabien-R-E, Busto-G-A, Khush-G-S, Mew-T-W., "The relationship between Xa-3, Xa-4 and Xa-4b for resistances to rice bacterial blight",
Rice Genetics Newsletter
, 1986, vol. 3, pp. 83-84
Ogawa-T, Yamamoto-T, Khush-G-S, Mew-T-W., "Inheritance of resistance to bacterial blight in Sateng. -A reinvestigation",
RGN
, 1986, vol. 3, pp. 80-82
Ogawa-T, Yamamoto-T., "Inheritance of resistance to bacterial blight in rice",
Rice Genetics. IRRI, Manila, Philippines
, 1986, pp. 471-479
Ogawa-T, Yamamoto-T, Khush-G-S, Mew-T-W., "The Xa-3 gene for resistance to Philippine races of bacterial blight of rice",
Rice Genetics Newsletter
, 1986, vol. 3, pp. 77-78
Ogawa-T, Lin-L, Tabien-R-E, Khush-G-S., "A new recessive gene for resistance to bacterial blight of rice",
Rice Genetics Newsletter
, 1987, vol. 4, pp. 98-100
Ogawa-T, Yamamoto-T, Khush-G-S, Mew-T-W., "Relationship among Xa-3, Xa-4 and Xa-4b resistant genes to rice bacterial leaf blight",
Japan J Breed
, 1987, vol. 37(Suppl. 1), pp. 176-177
Ogawa-T, Kaku-H, Yamamoto-T., "Resistance gene of rice cultivar, Asaminori to bacterial blight of rice",
Japan J Breed
, 1989, vol. 39(Suppl. 1), pp. 196-197
McCouch-S-R, Khush-G-S, Tanksley-S-D., "Tagging genes for disease and insect resistance via linkage to RFLP markers",
Rice Genetics, II. IRRI, Manila, Philippines
, 1991, pp. 443-449
Yoshimura-S, Yoshimura-A, Saito-A, Kishimoto-N, Kawase-M, Yano-M, Nakagahra-M, Ogawa-T, Iwata-N., "RFLP analysis of introgressed chromosomal segments in three near-isogenic lines of rice for bacterial blight resistance genes, Xa-1, Xa-3 and Xa-4",
Japanese journal of genetics
, 1992, vol. 67, pp. 29-37
Yoshimura-S, Nelson-R-J, Yoshimura-A, Mew-T-W, Iwata-N., "RFLP mapping of the bacterical blight resistance genes Xa-3 and Xa-4",
Rice Genetics Newsletter
, 1992, vol. 9, pp. 136-138
Yoshimura-A, Yoshimura-S, Nelson-R-J, McCouch-S-R, Mew-T-W, Iwata-N., "Mapping and combining of bacterial blight resistance genes in rice using molecular markers",
Japan J Breed
, 1993, vol. 43(Suppl. 1), p. 161
Causse-M-A, Fulton-T-M, Cho-Y-G, Ahn-S-N, Chunwongse-J, Wu-K, Xiao-J, Yu-Z, Ronald-P-C, Harrington-S-E, Second-G, McCouch-S-R, Tanksley-S-D., "Saturated molecular map of the rice genome based on an interspecific backcross population",
Genetics
, 1994, vol. 138, pp. 1251-1274
Multani-D-S, Jena-K-K, Brar-D-S, de los Reyes-B-G, Angeles-E-R, Khush-G-S., "Development of monosomic alien addition lines and introgression of genes from Oryza australiensis Domin to cultivated rice O sativa L",
Theoretical and applied genetics
, 1994, vol. 88, pp. 102-109
Yoshimura-S, Kurata-N, Sasaki-T, Yoshimura-A., "Genetic analysis of bacterial blight resistance genes in rice by using molecular markers",
Recent Advances in Breeding
, 1994, vol. 36, pp. 33-36
Yoshimura-S, Umehara-Y, Katayose-Y, Nagamura-Y, Iwata-N, Kurata-N., "Toward map-based cloning of Xa-1, the bacterial blight resistance gene in rice",
Rice Genome
, 1994, vol. 3(1), p. 5
Yoshimura-S, Yoshimura-A, Nelson-R-J, Mew-T-W, Iwata-N., "Tagging Xa-1, the bacterical blight resistance gene in rice, by using RAPD markers",
Breed Sci
, 1995, vol. 45, pp. 81-85
Yoshimura-S, Yoshimura-A, Iwata-N, McCouch-S-R, Abenes-M-L-P, Baraoidan-M-R, Mew-T-W, Nelson-R-J., "Tagging and combing bacterial blight resistance genes in rice using RAPD and RFLP markers",
Mol Breed
, 1995, vol. 1, pp. 375-387
Nelson-R-J, Ardales-E, Baraoidan-M-R, Yap-I, George-M-L-C, Chen-D-H, Finckh-M, Bordeos-A, Vera_Cruz-C-M, Adhikari-T, Mundt-C-C, Bustamam-M, Cruz-W, Leung-H, Huang-N, Yoshimura-A, McCouch-S-R, Mew-T-W, Leach-J-E., "Exploring the application of molecular markers for improving resistance to bacterial blight",
Rice Genetics, III. IRRI, Manila, Philippines. Proceedings of the Third International Rice Genetics Symposium, ed by G S Khush
, 1996, pp. 267-277
Ogawa-T., "Monitoring race distribution and identification of genes for resistance to bacterial leaf blight",
Rice Genetics, III. IRRI, Manila, Philippines. Proceedings of the Third International Rice Genetics Symposium, ed by G S Khush
, 1996, pp. 456-459
Yoshimura-A, Lei-J-X, Matsumoto-T, Tsunematsu-H, Yoshimura-S, Iwata-N, Baraoidan-M-R, Mew-T-W, Nelson-R-J., "Analysis and pyramiding of bacterial blight resistance genes in rice by using DNA marker",
Rice Genetics, III. IRRI, Manila, Philippines. Proceedings of the Third International Rice Genetics Symposium, ed by G S Khush
, 1996, pp. 577-581
Yoshimura-S, Umehara-Y, Kurata-N, Nagamura-Y, Sasaki-T, Minobe-Y, Iwata-N., "Identification of a YAC clone carrying the Xa-1 allele, a bacterial blight resistance gene in rice",
Theoretical and applied genetics
, 1996, vol. 93, pp. 117-122
Endo-N, Akiyoshi-M, Ogawa-T., "Resistance to Japanese races of rice bacterial blight in Vietnamese cultivars",
Breed Sci
, 1997, vol. 47(Suppl.2), pp. 128-128
Huang-N, Angeles-E-R, Domingo-J, Magpantay-G, Singh-S, Zhang-G, Kumaravadivel-N, Bennett-J, Khush-G-S., "Pyramiding of bacterial blight resistance genes in rice: marker-assisted selection using RFLP and PCR",
Theoretical and applied genetics
, 1997, vol. 95, pp. 313-320
Taura-S, Asahiro-M, Shimotu-F., "Reaction of FQ population from the cross of BJ1^IR24 to the Japanese bacterial blight pathogens",
Breed Sci
, 1997, vol. 47(Suppl. 1), p. 269
Leister-D, Kurth-J, Laurie-D-A, Yano-M, Sasaki-T, Graner-A., Schulze Lefert-P., "RFLP- and physical mapping of resistance gene homologues in rice (O. sativa) and barley (H. vulgare)",
Theoretical and applied genetics
, 1999, vol. 98, pp. 509-520
Li-Z-K, Luo-L-J, Mei-H-W, Paterson-A-H, Zhao-X-H, Zhong-D-B, Wang-Y-P, Yu-X-Q, Zhu-L, Tabien-R., "A 'defeated' rice resistance gene acts as a QTL against a virulent strain of Xanthomonas oryzae pv. oryzae",
Molecular & General Genetics
, 1999, vol. 261(1), pp. 58-63
Tan-Z, Zhang-Q, Zhu-L, Wang-C., "RFLP mapping of a rice bacterial blight resistance gene Xa-14",
Chinese Rice Res. Newslett.
, 1999, vol. 7(2), pp. 2-3
Kaku-H., "The additive effect of bacterial blight resistance genes Xa1 and Xa4 in rice",
Rice Genetics Newslett.
, 2000, vol. 17, pp. 78-80
Wang-J-L, Lei-C-L, Jiang-W-R, Ling-Z-Z., "[Genetic studies of blast resistance of indica variety Zhefu 802]",
Acta genetica Sinica
, 2000, vol. 27, pp. 235-239
Wang-J-S, Wang-J-K, Zhu-L-H, Gai-J-Y., "[Major-polygene effect analysis of resistance to bacterial blight (Xanthomonas campestris pv. oryzae) in rice]",
Acta genetica Sinica
, 2000, vol. 27, pp. 34-38
Wang-W-M, Zhai-W-X, Jiang-G-H, Chen-X-W, Li-X-B, Zhu-L-H., "Construction of a BAC contig containing Xa4 locus on Chromosome 11",
Rice Genetics Newslett.
, 2000, vol. 17, pp. 74-76
Zhong-D, Luo-L, Mei-H, Guo-L, Wang-Y, Xu-J, Yu-S, Ying-C, Li-Z., "Mapping of QTLs for bacterial blight resistance in rice",
Chinese Rice Res. Newslett.
, 2000, vol. 8(3), p. 2
Wang-G L, Leung-H, Ronald-P., "Structure, function, and evolution of disease resistance genes in rice",
Rice Genetics, IV. IRRI, Manila, Philippines
, 2001, pp. 335-342
Wang-W-M, Jiang-G-H, Wang-S-Q, Zhu-L-H, Zhai-W-X., "[Construction of a deep coverage rice BAC library and identification of clones associated with disease-resistant genes]",
Acta genetica Sinica
, 2001, vol. 28, pp. 120-128
Wang-W, Zhai-W, Luo-M, Jiang-G, Chen-X, Li-X, Wing-R-A, Zhu-L., "Chromosome landing at the bacterial blight resistance gene Xa4 locus using a deep coverage rice BAC library",
Mol Genet Genomics
, 2001, vol. 265, pp. 118-125
Wang-Z, Taramino-G, Yang-D, Liu-G, Tingey-S-V, Miao-G-H, Wang-G-L., "Rice ESTs with disease-resistance gene- or defense-response gene-like sequences mapped to regions containing major resistance genes or QTLs",
Mol Genet Genomics
, 2001, vol. 265, pp. 302-310
Sun-X, Yang-Z, Wang-S, Zhang-Q., "Identification of a 47-kb DNA fragment containing Xa4, a locus for bacterial blight resistance in rice",
Theor. Appl. Genet.
, 2003, vol. 106, pp. 683-687
Wen-N, Chu-Z, Wang-S., "Three types of defense-responsive genes are involved in resistance to bacterial blight and fungal blast diseases in rice",
Mol. Genet. Genomics
, 2003, vol. 269, pp. 331-339
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