There is allele data for locus "RM235" from 4 experiments.
Title | Design | Polymorphism Type | Allele Scoring Protocol | PI(s) | Comments | Data |
---|---|---|---|---|---|---|
Evaluation of Genetic diversity in Rice Subspecies Using Microsatellite Markers | 38 U.S rice cultivars and 2 wild relatives were genotyped by means of 111 genomic SSR markers | SSR | PCR products were size separated using ABI 377 DNA analyzer; SSR fragements sizes were estimated with GenScan software. Alleles were called manually using PCR products of IR36 as a standard. | Mackill-D-J | Population structure was inferred using genetic-distance method with 111 SSR markers. Reference: Ni et al., 2002. | Show Allele Data |
The Population Structure of African Cultivated Rice Oryza glaberrima (Steud.): Evidence for Elavated Levels of Linkage Disequilibrium Caused by Admixture with O. sativa and Ecological Adaptation | 198 O. glaberrima and 9 O. sativa accessions were evaluated using 93 SSR markers. | SSR | PCR products were size separated using polyacrylamine gel electrophoresis and detected using silver staining or using an ABI fluorescent detection system. Alleles were scored using Genotyper software. | McCouch-S-R | Reference: Semon et al., 2005. | Show Allele Data |
Mapping quantitative trait loci for yield, yield components and morphological traits in an advanced backcross population between Oryza rufipogon and the Oryza sativa cultivar Jefferson | Phenotypic evaluation was done in a greenhouse for 353 BC2F1 families and in three field trials for 258 BC2F2 families. Genotyping (104 SSRs and 49 RFLPs) was done on the 353 BC2F2 families | SSR RFLP | Geneotype value 1= Homozygous Jefferson; 3 = Heterozygous Jefferson/O. rufipogon., | McCouch-S-R | Seventy-six QTLs were identified using interval mapping and composite interval mapping. A putative QTL was reported if detected in at least one environment at an experiment-wise significance threshold of P < 0.01. Reference: Thomson et al., 2003. | Show Allele Data |
Quantitative trait loci for yield and yield components in an Oryza sativa X Oryza rufipogon BC2F2 population evaluated in an upland environment | 274 BC2F2 families from the Caiapo X Oryza rufipogon (IRGC 105491) were phenotyped for 8 traits and genotyped with 125 RFLPs and SSLPs. | SSR RFLP | Geneotype value 1= Homozygous Caiapo; 3 = Heterozygous Caiapo/O. rufipogon., | McCouch-S-R | Reference: Moncada et al., 2001. | Show Allele Data |