There is allele data for locus "RM277" from 3 experiments.
Title | Design | Polymorphism Type | Allele Scoring Protocol | PI(s) | Comments | Data |
---|---|---|---|---|---|---|
Genetic structure and diversity in Oryza sativa L. | 234 rice accessions from wide geographical regions of the world genotyped at 169 nuclear and 2 chloroplast loci to elucidate diversity within subspecies Oryza sativa indica and japonica | SSR | PCR products were size separated by capillary elctrophoresis using ABI 3700 DNA analyzer; SSRs were analysed with GenScan 3.1.2 software and scored with Genotyper 2.5 software. | McCouch-S-R, Tai-T-H | Prediction of population structure was model-based (STRUCTURE) and based on data from 169 genomic SSRs. Reference: Garris et al., 2005. | Show Allele Data |
Population Structure and Breeding Patterns of 145 U.S. Rice Cultivars Based on SSR Marker Analysis | 115 U.S rice cultivars and 30 ancestral rice accessions introduced from Asia were genotyped by means of 169 genomic SSR markers. | SSR | PCR products were size separated using ABI 3700 DNA analyzer; SSR fragements sizes were estimated with GenScan 3.1.2 software. Alleles were scored with Genotyper 2.5 software using the LocalSouthernMethod, and binned manually. | McCouch-S-R, Tai-T-H | Population structure was inferred using genetic-distance method with 169 SSR markers. Reference: Lu et al., 2005. | Show Allele Data |
Mapping quantitative trait loci for yield, yield components and morphological traits in an advanced backcross population between Oryza rufipogon and the Oryza sativa cultivar Jefferson | Phenotypic evaluation was done in a greenhouse for 353 BC2F1 families and in three field trials for 258 BC2F2 families. Genotyping (104 SSRs and 49 RFLPs) was done on the 353 BC2F2 families | SSR RFLP | Geneotype value 1= Homozygous Jefferson; 3 = Heterozygous Jefferson/O. rufipogon., | McCouch-S-R | Seventy-six QTLs were identified using interval mapping and composite interval mapping. A putative QTL was reported if detected in at least one environment at an experiment-wise significance threshold of P < 0.01. Reference: Thomson et al., 2003. | Show Allele Data |