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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Sorghum-Sorghum bicolor JGI8X 2007
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Chr. 2
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
EST
EST Cluster
Gene Prediction
Genomic DNA
GSS
mRNA
OVERGO
Synteny block
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
IAGP
Marker Identity
ISS
Wheat EST Breakpoint Interval
Amplified segment
Maize bin marker
centromeric_marker
Clone end
Collinear block
Constituent clone
contained_in_sequence
EST cluster
hybridisation
maizegdb_to_gramene
Mapped contig to clone
mate_pair
qtl_marker
related_probe
related_sequence
Shared sequence
Shared synonym
Source sequence
Subclone
Synteny
Synteny block
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Sequence [ View Map Type Info ]
Map Set Name: Sorghum - Sorghum bicolor JGI8X 2007 [ View Map Set Info ]
Map Name: Chr. 2
Map Start: 1
Map Stop: 77,927,413
Features by Type:
18,465 EST
8,232 EST Cluster
3,119 Gene Prediction
36 Genomic DNA
42 GSS
12,767 mRNA
152 OVERGO
87 Synteny block
42,900 Total

Map Features

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Items 1 to 25 of 42,900.       of 1,716 | Next
Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 2
(Click headers to resort)		 Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
Sb02g000200 Gene Prediction 63,779 - 113,506 No other positions
Sb02g000210 Gene Prediction 115,163 - 118,796 No other positions
Sb02g000220 Gene Prediction 123,977 - 125,807 No other positions
Sb02g000240 Gene Prediction 138,434 - 142,111 No other positions
Sb02g000250 Gene Prediction 143,076 - 148,301 No other positions
Sb02g000260 Gene Prediction 148,971 - 150,728 No other positions
Sb02g000280 Gene Prediction 154,134 - 156,914 No other positions
Sb02g000290 Gene Prediction 165,298 - 166,740 No other positions
Sb02g000310 Gene Prediction 191,914 - 198,624 No other positions
Sb02g000320 Gene Prediction 201,209 - 207,438 No other positions
Sb02g000330 Gene Prediction 243,635 - 244,612 Switchgrass - Okada 2010 - IIb-m sww1581_225 STS 7.86 (cM) related_sequence View Maps
Switchgrass - Okada 2010 - IIb-m sww1581_225 STS 7.86 (cM) related_sequence View Maps
Sb02g000340 Gene Prediction 262,006 - 272,041 No other positions
Sb02g000350 Gene Prediction 275,660 - 276,166 No other positions
Sb02g000360 Gene Prediction 299,657 - 301,144 No other positions
Sb02g000365 Gene Prediction 305,816 - 310,562 No other positions
Sb02g000370 Gene Prediction 314,050 - 315,638 No other positions
Sb02g000380 Gene Prediction 317,950 - 319,566 No other positions
Sb02g000390 Gene Prediction 326,963 - 329,368 No other positions
Sb02g000400 Gene Prediction 329,963 - 332,990 No other positions
Sb02g000420 Gene Prediction 359,454 - 362,032 No other positions
Sb02g000430 Gene Prediction 371,612 - 375,578 No other positions
Sb02g000440 Gene Prediction 379,666 - 382,969 No other positions
Sb02g000450 Gene Prediction 393,009 - 396,452 No other positions
Sb02g000460 Gene Prediction 417,567 - 418,643 No other positions
Sb02g000470 Gene Prediction 426,181 - 427,742 No other positions