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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Sorghum-Sorghum bicolor JGI8X 2007
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Chr. 9
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
EST
EST Cluster
Gene Prediction
Genomic DNA
GSS
mRNA
OVERGO
Synteny block
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
IAGP
Marker Identity
ISS
Wheat EST Breakpoint Interval
Amplified segment
Maize bin marker
centromeric_marker
Clone end
Collinear block
Constituent clone
contained_in_sequence
EST cluster
hybridisation
maizegdb_to_gramene
Mapped contig to clone
mate_pair
qtl_marker
related_probe
related_sequence
Shared sequence
Shared synonym
Source sequence
Subclone
Synteny
Synteny block
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Sequence [ View Map Type Info ]
Map Set Name: Sorghum - Sorghum bicolor JGI8X 2007 [ View Map Set Info ]
Map Name: Chr. 9
Map Start: 1
Map Stop: 59,622,314
Features by Type:
13,374 EST
5,478 EST Cluster
1,901 Gene Prediction
28 Genomic DNA
24 GSS
8,819 mRNA
100 OVERGO
16 Synteny block
29,740 Total

Map Features

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Items 1 to 25 of 29,740.       of 1,190 | Next
Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 9
(Click headers to resort)		 Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
Sb09g000200 Gene Prediction 17,759 - 24,172 No other positions
Sb09g000210 Gene Prediction 52,215 - 57,605 No other positions
Sb09g000220 Gene Prediction 62,022 - 63,983 No other positions
Sb09g000240 Gene Prediction 69,516 - 76,551 No other positions
Sb09g000250 Gene Prediction 78,107 - 82,348 No other positions
Sb09g000260 Gene Prediction 83,387 - 84,652 No other positions
Sb09g000270 Gene Prediction 88,633 - 91,626 No other positions
Sb09g000280 Gene Prediction 98,219 - 98,970 No other positions
Sb09g000290 Gene Prediction 105,613 - 107,110 No other positions
Sb09g000300 Gene Prediction 139,827 - 141,111 No other positions
Sb09g000310 Gene Prediction 142,300 - 143,800 No other positions
Sb09g000320 Gene Prediction 147,845 - 152,329 No other positions
Sb09g000330 Gene Prediction 152,753 - 159,965 No other positions
Sb09g000340 Gene Prediction 165,547 - 168,402 No other positions
Sb09g000350 Gene Prediction 169,939 - 172,946 No other positions
Sb09g000370 Gene Prediction 179,747 - 180,300 No other positions
Sb09g000380 Gene Prediction 187,598 - 188,375 No other positions
Sb09g000390 Gene Prediction 189,351 - 193,854 No other positions
Sb09g000400 Gene Prediction 194,278 - 198,095 No other positions
Sb09g000410 Gene Prediction 202,592 - 206,079 No other positions
Sb09g000420 Gene Prediction 206,546 - 212,680 No other positions
Sb09g000430 Gene Prediction 215,997 - 217,169 No other positions
Sb09g000450 Gene Prediction 223,935 - 225,025 No other positions
Sb09g000460 Gene Prediction 225,437 - 227,445 No other positions
Sb09g000470 Gene Prediction 230,820 - 233,368 No other positions