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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Sorghum-Sorghum bicolor JGI8X 2007
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Chr. 8
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
EST
EST Cluster
Gene Prediction
Genomic DNA
GSS
mRNA
OVERGO
Synteny block
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
IAGP
Marker Identity
ISS
Wheat EST Breakpoint Interval
Amplified segment
Maize bin marker
centromeric_marker
Clone end
Collinear block
Constituent clone
contained_in_sequence
EST cluster
hybridisation
maizegdb_to_gramene
Mapped contig to clone
mate_pair
qtl_marker
related_probe
related_sequence
Shared sequence
Shared synonym
Source sequence
Subclone
Synteny
Synteny block
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Sequence [ View Map Type Info ]
Map Set Name: Sorghum - Sorghum bicolor JGI8X 2007 [ View Map Set Info ]
Map Name: Chr. 8
Map Start: 1
Map Stop: 55,459,831
Features by Type:
7,928 EST
3,477 EST Cluster
1,293 Gene Prediction
9 Genomic DNA
24 GSS
5,417 mRNA
63 OVERGO
39 Synteny block
18,250 Total

Map Features

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Items 1 to 25 of 18,250.       of 730 | Next
Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 8
(Click headers to resort)		 Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
Sb08g000200 Gene Prediction 10,323 - 14,034 No other positions
Sb08g000203 Gene Prediction 15,736 - 16,315 No other positions
Sb08g000206 Gene Prediction 16,535 - 16,841 No other positions
Sb08g000220 Gene Prediction 23,381 - 26,501 No other positions
Sb08g000230 Gene Prediction 38,190 - 40,022 No other positions
Sb08g000235 Gene Prediction 41,858 - 44,713 No other positions
Sb08g000240 Gene Prediction 48,933 - 49,656 No other positions
Sb08g000250 Gene Prediction 50,656 - 56,753 No other positions
Sb08g000260 Gene Prediction 61,566 - 70,163 No other positions
Sb08g000270 Gene Prediction 94,559 - 98,255 No other positions
Sb08g000280 Gene Prediction 118,579 - 126,834 No other positions
Sb08g000290 Gene Prediction 126,918 - 128,695 No other positions
Sb08g000300 Gene Prediction 131,261 - 132,278 No other positions
Sb08g000310 Gene Prediction 142,093 - 144,520 No other positions
Sb08g000320 Gene Prediction 145,292 - 148,530 No other positions
Sb08g000350 Gene Prediction 165,716 - 170,086 No other positions
Sb08g000360 Gene Prediction 186,966 - 191,230 No other positions
Sb08g000370 Gene Prediction 194,419 - 195,678 No other positions
Sb08g000380 Gene Prediction 200,326 - 208,311 No other positions
Sb08g000390 Gene Prediction 219,484 - 223,826 No other positions
Sb08g000400 Gene Prediction 228,278 - 235,478 No other positions
Sb08g000410 Gene Prediction 239,584 - 241,297 No other positions
Sb08g000420 Gene Prediction 245,257 - 246,666 No other positions
Sb08g000430 Gene Prediction 249,216 - 311,084 No other positions
Sb08g000460 Gene Prediction 340,167 - 344,465 No other positions