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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Sorghum-Sorghum bicolor JGI8X 2007
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Chr. 6
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
EST
EST Cluster
Gene Prediction
Genomic DNA
GSS
mRNA
OVERGO
Synteny block
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
IAGP
Marker Identity
ISS
Wheat EST Breakpoint Interval
Amplified segment
Maize bin marker
centromeric_marker
Clone end
Collinear block
Constituent clone
contained_in_sequence
EST cluster
hybridisation
maizegdb_to_gramene
Mapped contig to clone
mate_pair
qtl_marker
related_probe
related_sequence
Shared sequence
Shared synonym
Source sequence
Subclone
Synteny
Synteny block
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Sequence [ View Map Type Info ]
Map Set Name: Sorghum - Sorghum bicolor JGI8X 2007 [ View Map Set Info ]
Map Name: Chr. 6
Map Start: 1
Map Stop: 62,205,628
Features by Type:
12,166 EST
5,714 EST Cluster
2,150 Gene Prediction
24 Genomic DNA
21 GSS
8,903 mRNA
99 OVERGO
31 Synteny block
29,108 Total

Map Features

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Items 1 to 25 of 29,108.       of 1,165 | Next
Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 6
(Click headers to resort)		 Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
Sb06g000200 Gene Prediction 11,607 - 14,911 No other positions
Sb06g000220 Gene Prediction 21,508 - 25,736 No other positions
Sb06g000230 Gene Prediction 35,170 - 35,993 No other positions
Sb06g000240 Gene Prediction 71,241 - 72,363 No other positions
Sb06g000250 Gene Prediction 97,105 - 101,215 No other positions
Sb06g000260 Gene Prediction 106,880 - 108,955 No other positions
Sb06g000270 Gene Prediction 172,873 - 175,244 No other positions
Sb06g000310 Gene Prediction 254,814 - 258,492 No other positions
Sb06g000330 Gene Prediction 303,101 - 305,095 No other positions
Sb06g000370 Gene Prediction 358,679 - 365,523 Switchgrass - Okada 2010 - IIb-f sww2165_185 STS 39.39 (cM) related_sequence View Maps
Switchgrass - Okada 2010 - IIb-f sww2165_185 STS 39.39 (cM) related_sequence View Maps
Sb06g000380 Gene Prediction 367,608 - 370,391 Switchgrass - Okada 2010 - IIb-f sww2165_185 STS 39.39 (cM) related_sequence View Maps
Switchgrass - Okada 2010 - IIb-f sww2165_185 STS 39.39 (cM) related_sequence View Maps
Sb06g000390 Gene Prediction 371,050 - 377,297 No other positions
Sb06g000400 Gene Prediction 378,261 - 381,673 No other positions
Sb06g000410 Gene Prediction 384,330 - 398,268 No other positions
Sb06g000420 Gene Prediction 429,427 - 432,320 No other positions
Sb06g000430 Gene Prediction 454,965 - 458,578 No other positions
Sb06g000440 Gene Prediction 460,641 - 464,641 No other positions
Sb06g000450 Gene Prediction 468,828 - 476,319 No other positions
Sb06g000460 Gene Prediction 484,300 - 488,029 No other positions
Sb06g000470 Gene Prediction 493,912 - 494,577 Switchgrass - Okada 2010 - VIIb-f sww2826_172 STS 63.58 (cM) related_sequence View Maps
Switchgrass - Okada 2010 - VIIb-f sww2826_172 STS 63.58 (cM) related_sequence View Maps
Sb06g000480 Gene Prediction 498,638 - 500,211 No other positions
Sb06g000490 Gene Prediction 509,490 - 510,504 No other positions
Sb06g000495 Gene Prediction 526,777 - 530,409 No other positions
Sb06g000500 Gene Prediction 534,205 - 537,333 No other positions
Sb06g000510 Gene Prediction 543,953 - 545,392 No other positions