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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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 Map Options
Map Set Oryza sativa japonica-IARI Nipponbare SSR 2009
(Reference Set)
Min.
Correspondences
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Maps 3
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hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
SSR
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
IAGP
Marker Identity
ISS
Wheat EST Breakpoint Interval
Amplified segment
Maize bin marker
centromeric_marker
Clone end
Collinear block
Constituent clone
contained_in_sequence
EST cluster
hybridisation
maizegdb_to_gramene
Mapped contig to clone
mate_pair
qtl_marker
related_probe
related_sequence
Shared sequence
Shared synonym
Source sequence
Subclone
Synteny
Synteny block
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Sequence [ View Map Type Info ]
Map Set Name: Oryza sativa japonica - IARI Nipponbare SSR 2009 [ View Map Set Info ]
Map Name: 3
Map Start: 0 bp
Map Stop: 36,316,003 bp
Features by Type:
543 SSR
543 Total

Map Features

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Items 1 to 25 of 543.       of 22 | Next
Oryza sativa japonica - IARI Nipponbare SSR 2009 - 3
(Click headers to resort)		 Comparative Maps
Feature Type Position (bp) Map Feature Type Position Evidence Actions
RGNMS937 SSR 41,732 No other positions
RGNMS938 SSR 63,432 No other positions
RGNMS939 SSR 67,512 No other positions
RGNMS940 SSR 81,814 No other positions
RGNMS941 SSR 88,344 No other positions
RGNMS942 SSR 99,845 No other positions
RGNMS943a SSR 104,044 No other positions
RGNMS943b SSR 104,044 No other positions
RGNMS944 SSR 104,474 No other positions
RGNMS945 SSR 114,836 No other positions
RGNMS946 SSR 121,199 No other positions
RGNMS947a SSR 150,421 No other positions
RGNMS947b SSR 152,820 No other positions
RGNMS948 SSR 246,946 No other positions
RGNMS949a SSR 250,562 No other positions
RGNMS949b SSR 295,655 No other positions
RGNMS950 SSR 349,200 No other positions
RGNMS951 SSR 379,700 No other positions
RGNMS952 SSR 379,700 No other positions
RGNMS953 SSR 418,711 No other positions
RGNMS954 SSR 503,070 No other positions
RGNMS955a SSR 588,226 No other positions
RGNMS955b SSR 590,078 No other positions
RGNMS955c SSR 592,507 No other positions
RGNMS956a SSR 775,775 No other positions