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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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 Map Options
Map Set Oryza sativa japonica-IARI Nipponbare SSR 2009
(Reference Set)
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Correspondences
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Maps 2
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hint: To save time, select the desired options before redrawing the map.
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 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
SSR
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
IAGP
Marker Identity
ISS
Wheat EST Breakpoint Interval
Amplified segment
Maize bin marker
centromeric_marker
Clone end
Collinear block
Constituent clone
contained_in_sequence
EST cluster
hybridisation
maizegdb_to_gramene
Mapped contig to clone
mate_pair
qtl_marker
related_probe
related_sequence
Shared sequence
Shared synonym
Source sequence
Subclone
Synteny
Synteny block
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Sequence [ View Map Type Info ]
Map Set Name: Oryza sativa japonica - IARI Nipponbare SSR 2009 [ View Map Set Info ]
Map Name: 2
Map Start: 0 bp
Map Stop: 35,839,271 bp
Features by Type:
497 SSR
497 Total

Map Features

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Items 1 to 25 of 497.       of 20 | Next
Oryza sativa japonica - IARI Nipponbare SSR 2009 - 2
(Click headers to resort)		 Comparative Maps
Feature Type Position (bp) Map Feature Type Position Evidence Actions
RGNMS488 SSR 4,860 No other positions
RGNMS489 SSR 13,148 No other positions
RGNMS490 SSR 14,624 No other positions
RGNMS491a SSR 50,766 No other positions
RGNMS491b SSR 55,838 No other positions
RGNMS492 SSR 80,193 No other positions
RGNMS493 SSR 108,650 No other positions
RGNMS494 SSR 120,425 No other positions
RGNMS495 SSR 124,645 No other positions
RGNMS496 SSR 127,759 No other positions
RGNMS497 SSR 146,494 No other positions
RGNMS498 SSR 168,683 No other positions
RGNMS499 SSR 183,440 No other positions
RGNMS500 SSR 264,714 No other positions
RGNMS501 SSR 293,310 No other positions
RGNMS502 SSR 386,211 No other positions
RGNMS503 SSR 567,222 No other positions
RGNMS504 SSR 625,824 No other positions
RGNMS505 SSR 651,893 No other positions
RGNMS506 SSR 679,774 No other positions
RGNMS507 SSR 715,301 No other positions
RGNMS508 SSR 825,777 No other positions
RGNMS509 SSR 918,797 No other positions
RGNMS510 SSR 930,460 No other positions
RGNMS511 SSR 930,868 No other positions