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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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 Map Options
Map Set Oryza sativa japonica-IARI Nipponbare SSR 2009
(Reference Set)
Min.
Correspondences
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Maps 12
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hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
SSR
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
IAGP
Marker Identity
ISS
Wheat EST Breakpoint Interval
Amplified segment
Maize bin marker
centromeric_marker
Clone end
Collinear block
Constituent clone
contained_in_sequence
EST cluster
hybridisation
maizegdb_to_gramene
Mapped contig to clone
mate_pair
qtl_marker
related_probe
related_sequence
Shared sequence
Shared synonym
Source sequence
Subclone
Synteny
Synteny block
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Sequence [ View Map Type Info ]
Map Set Name: Oryza sativa japonica - IARI Nipponbare SSR 2009 [ View Map Set Info ]
Map Name: 12
Map Start: 0 bp
Map Stop: 27,437,690 bp
Features by Type:
291 SSR
291 Total

Map Features

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Items 1 to 25 of 291.       of 12 | Next
Oryza sativa japonica - IARI Nipponbare SSR 2009 - 12
(Click headers to resort)		 Comparative Maps
Feature Type Position (bp) Map Feature Type Position Evidence Actions
RGNMS3612 SSR 88,406 No other positions
RGNMS3613 SSR 104,119 No other positions
RGNMS3614 SSR 160,032 No other positions
RGNMS3615 SSR 205,234 No other positions
RGNMS3616 SSR 225,988 No other positions
RGNMS3617 SSR 358,109 No other positions
RGNMS3618 SSR 497,458 No other positions
RGNMS3619 SSR 512,262 No other positions
RGNMS3620 SSR 583,002 No other positions
RGNMS3621 SSR 598,208 No other positions
RGNMS3622 SSR 642,600 No other positions
RGNMS3623 SSR 655,105 No other positions
RGNMS3624 SSR 694,945 No other positions
RGNMS3625 SSR 699,513 No other positions
RGNMS3626 SSR 932,578 No other positions
RGNMS3627 SSR 973,799 No other positions
RGNMS3628 SSR 975,720 No other positions
RGNMS3629 SSR 1,137,362 No other positions
RGNMS3630 SSR 1,367,752 No other positions
RGNMS3631 SSR 1,512,724 No other positions
RGNMS3632 SSR 1,541,361 No other positions
RGNMS3633 SSR 1,559,716 No other positions
RGNMS3634 SSR 1,594,730 No other positions
RGNMS3635a SSR 1,605,535 No other positions
RGNMS3635b SSR 1,605,535 No other positions