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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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 Map Options
Map Set Oryza sativa japonica-IARI Nipponbare SSR 2009
(Reference Set)
Min.
Correspondences
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Maps 10
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hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
SSR
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
IAGP
Marker Identity
ISS
Wheat EST Breakpoint Interval
Amplified segment
Maize bin marker
centromeric_marker
Clone end
Collinear block
Constituent clone
contained_in_sequence
EST cluster
hybridisation
maizegdb_to_gramene
Mapped contig to clone
mate_pair
qtl_marker
related_probe
related_sequence
Shared sequence
Shared synonym
Source sequence
Subclone
Synteny
Synteny block
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Sequence [ View Map Type Info ]
Map Set Name: Oryza sativa japonica - IARI Nipponbare SSR 2009 [ View Map Set Info ]
Map Name: 10
Map Start: 0 bp
Map Stop: 22,858,213 bp
Features by Type:
215 SSR
215 Total

Map Features

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Items 1 to 25 of 215.       of 9 | Next
Oryza sativa japonica - IARI Nipponbare SSR 2009 - 10
(Click headers to resort)		 Comparative Maps
Feature Type Position (bp) Map Feature Type Position Evidence Actions
RGNMS3192a SSR 30,526 No other positions
RGNMS3192b SSR 30,526 No other positions
RGNMS3193a SSR 101,616 No other positions
RGNMS3193b SSR 101,616 No other positions
RGNMS3194 SSR 173,614 No other positions
RGNMS3195 SSR 224,400 No other positions
RGNMS3196 SSR 271,977 No other positions
RGNMS3197 SSR 286,896 No other positions
RGNMS3198 SSR 331,121 No other positions
RGNMS3199a SSR 393,304 No other positions
RGNMS3199b SSR 401,078 No other positions
RGNMS3200 SSR 561,241 No other positions
RGNMS3201 SSR 600,742 No other positions
RGNMS3202 SSR 790,310 No other positions
RGNMS3203 SSR 1,518,953 No other positions
RGNMS3204 SSR 1,532,057 No other positions
RGNMS3205 SSR 1,539,962 No other positions
RGNMS3206 SSR 1,581,119 No other positions
RGNMS3207 SSR 1,606,899 No other positions
RGNMS3208 SSR 1,905,641 No other positions
RGNMS3209a SSR 1,927,834 No other positions
RGNMS3209b SSR 1,927,834 No other positions
RGNMS3210 SSR 2,035,073 No other positions
RGNMS3211 SSR 2,167,342 No other positions
RGNMS3212 SSR 2,180,707 No other positions