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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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 Map Options
Map Set Oryza sativa japonica-IARI Nipponbare SSR 2009
(Reference Set)
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Correspondences
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Maps 1
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
SSR
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
IAGP
Marker Identity
ISS
Wheat EST Breakpoint Interval
Amplified segment
Maize bin marker
centromeric_marker
Clone end
Collinear block
Constituent clone
contained_in_sequence
EST cluster
hybridisation
maizegdb_to_gramene
Mapped contig to clone
mate_pair
qtl_marker
related_probe
related_sequence
Shared sequence
Shared synonym
Source sequence
Subclone
Synteny
Synteny block
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Sequence [ View Map Type Info ]
Map Set Name: Oryza sativa japonica - IARI Nipponbare SSR 2009 [ View Map Set Info ]
Map Name: 1
Map Start: 0 bp
Map Stop: 43,499,661 bp
Features by Type:
547 SSR
547 Total

Map Features

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Items 1 to 25 of 547.       of 22 | Next
Oryza sativa japonica - IARI Nipponbare SSR 2009 - 1
(Click headers to resort)		 Comparative Maps
Feature Type Position (bp) Map Feature Type Position Evidence Actions
RGNMS1 SSR 22,322 No other positions
RGNMS2 SSR 25,096 No other positions
RGNMS3a SSR 59,917 No other positions
RGNMS3b SSR 59,917 No other positions
RGNMS4 SSR 79,765 No other positions
RGNMS5 SSR 81,181 No other positions
RGNMS6 SSR 146,734 No other positions
RGNMS7a SSR 169,922 No other positions
RGNMS7b SSR 170,874 No other positions
RGNMS8 SSR 203,406 No other positions
RGNMS9a SSR 204,507 No other positions
RGNMS9b SSR 207,327 No other positions
RGNMS10 SSR 210,442 No other positions
RGNMS11 SSR 224,667 No other positions
RGNMS12 SSR 246,170 No other positions
RGNMS13 SSR 270,720 No other positions
RGNMS14 SSR 393,453 No other positions
RGNMS15 SSR 519,879 No other positions
RGNMS16 SSR 548,921 No other positions
RGNMS17 SSR 560,020 No other positions
RGNMS18 SSR 611,036 No other positions
RGNMS19 SSR 637,760 No other positions
RGNMS20 SSR 743,994 No other positions
RGNMS21 SSR 1,055,504 No other positions
RGNMS22 SSR 1,346,622 No other positions