grain_iconCMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Saved Links | Help | Tutorial  
*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Oat-Cornell Kan/Ogl QTL 1995
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps 2
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
QTL
RFLP
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
IAGP
Marker Identity
ISS
Wheat EST Breakpoint Interval
Amplified segment
Maize bin marker
centromeric_marker
Clone end
Collinear block
Constituent clone
contained_in_sequence
EST cluster
hybridisation
maizegdb_to_gramene
Mapped contig to clone
mate_pair
qtl_marker
related_probe
related_sequence
Shared sequence
Shared synonym
Source sequence
Subclone
Synteny
Synteny block
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: QTL [ View Map Type Info ]
Map Set Name: Oat - Cornell Kan/Ogl QTL 1995 [ View Map Set Info ]
Map Name: 2
Map Start: 0 cM
Map Stop: 55.5 cM
Features by Type:
2 QTL
9 RFLP
11 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 11 of 11.
Oat - Cornell Kan/Ogl QTL 1995 - 2
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
Xcdo539B RFLP 54.8 Oryza sativa - Cornell 9024/LH422 RI QTL 1996 - 4 CQAS44 QTL 0 - 61.4 (cM) qtl_marker View Maps
Oryza sativa japonica - Gramene Annot Seq 2009 - Chr. 4 CQAS47-SDNB QTL 21,451,046 - 33,664,487 (bp) qtl_marker View Maps
Maize - IBM2 2008 Neighbors - 2 cdo539b Probed site 77.7 (cM) maizegdb_to_gramene View Maps
Oat - Oat, KxO, 2003 - 17 cdo539c RFLP 16.6 (cM) Marker Identity View Maps
Oat - Oat, KxO, 2003 - 2 CDO539a RFLP 36.1 (cM) Marker Identity View Maps
Oryza sativa japonica - Gramene Annot Seq 2009 - Chr. 4 CDO539 RFLP 31,279,063 - 31,279,523 (bp) Marker Identity View Maps
Oryza sativa japonica - Gramene Annot Seq 2009 - Chr. 4 CQAS51-SDNB QTL 21,451,046 - 33,664,487 (bp) qtl_marker View Maps
Oryza sativa japonica - Gramene Annot Seq 2009 - Chr. 4 CQAS49-TSDWT QTL 21,451,046 - 33,664,487 (bp) qtl_marker View Maps
Oryza sativa japonica - Gramene Annot Seq 2009 - Chr. 4 CQAS46-SPKDN QTL 21,451,046 - 33,664,487 (bp) qtl_marker View Maps
Oryza sativa japonica - Gramene Annot Seq 2009 - Chr. 4 CQAS50-SPKNB QTL 31,279,063 - 33,664,487 (bp) qtl_marker View Maps
Oryza sativa - Cornell 9024/LH422 RI QTL 1996 - 4 CQAS47 QTL 0 - 61.4 (cM) qtl_marker View Maps
Maize - Bins - 2 Bin 2.02 Maize Bin 12.4 - 50.6 (bins) Maize bin marker View Maps
Oryza sativa x Oryza longistaminata - Cornell RFLP 2001 - 4 CDO539X RFLP 71.95 (cM) Marker Identity View Maps
Maize - Cornell Wilson 1999 - 10 CDO539a RFLP 145.1 (cM) Marker Identity View Maps
Oat - Cornell Diploid 1995 - B CDO539 RFLP 30.4 (cM) Marker Identity View Maps
Oryza sativa - Cornell 9024/LH422 RI QTL 1996 - 4 CQAS52 QTL 0 - 19.4 (cM) qtl_marker View Maps
Oryza sativa - Cornell 9024/LH422 RI QTL 1996 - 4 CQAS50 QTL 0 - 19.4 (cM) qtl_marker View Maps
Oryza sativa japonica - Gramene Annot Seq 2009 - Chr. 4 CQAS44-PNNB QTL 21,451,046 - 33,664,487 (bp) qtl_marker View Maps
Maize - Maize Bins QTL 2005 - 10 Bin 10.06 Maize Bin 97.7 - 114.1 (cM) Maize bin marker View Maps
Maize - IBM2 2008 Neighbors - 10 cdo539a Probed site 437.4 (cM) maizegdb_to_gramene View Maps
Maize - Bins - 10 Bin 10.06 Maize Bin 97.7 - 114.1 (bins) Maize bin marker View Maps
Oryza sativa - Cornell 9024/LH422 RI QTL 1996 - 4 CQAS46 QTL 0 - 61.4 (cM) qtl_marker View Maps
Oryza sativa - Cornell 9024/LH422 RI QTL 1996 - 4 CDO539 RFLP 11.7 (cM) Marker Identity View Maps
Oryza sativa - Cornell 9024/LH422 RI QTL 1996 - 4 CQAS51 QTL 0 - 61.4 (cM) qtl_marker View Maps
Oryza sativa japonica - Gramene Annot Seq 2009 - Chr. 4 CQAS52-YLD QTL 31,279,063 - 33,664,487 (bp) qtl_marker View Maps
Oryza sativa x Oryza longistaminata - Cornell RFLP 1994 - 4 CDO539X RFLP 88.9 (cM) Marker Identity View Maps
Oryza sativa - Cornell 9024/LH422 RI QTL 1996 - 4 CQAS49 QTL 0 - 61.4 (cM) qtl_marker View Maps
Maize - Maize Bins QTL 2005 - 2 Bin 2.02 Maize Bin 12.4 - 50.6 (cM) Maize bin marker View Maps
Xbcd1779 RFLP 46.1 Oat - Oat, KxO, 2003 - 2 BCD1779 RFLP 37.4 (cM) Marker Identity View Maps
Wheat - Cornell Synthetic/Opata 1995 - 2B Xbcd1779-2B RFLP 102.2 (cM) Marker Identity View Maps
Oryza sativa x Oryza longistaminata - Cornell RFLP 1994 - 4 BCD1779 RFLP 67.9 (cM) Marker Identity View Maps
Oryza sativa japonica - Gramene Annot Seq 2009 - Chr. 4 BCD1779 RFLP 30,615,688 - 30,616,009 (bp) Marker Identity View Maps
Oat - Cornell Diploid 1995 - D BCD1779 RFLP 42.2 (cM) Marker Identity View Maps
Oryza sativa x Oryza longistaminata - Cornell RFLP 2001 - 4 BCD1779 RFLP 61.75 (cM) Marker Identity View Maps
Wheat - Synthetic/Opata RI RFLP/SSR QT - 2B Xbcd1779-2B RFLP 102.2 (cM) Marker Identity View Maps
Oryza sativa japonica - Gramene Annot Seq 2009 - Chr. 4 BCD1779 RFLP 30,616,520 - 30,617,297 (bp) Marker Identity View Maps
Wheat - Wheat composite QTL 2004 - 2B Xbcd1779 RFLP 88 (cM) Marker Identity View Maps
Wheat - Composite 2004 - 2B Xbcd1779 RFLP 88 (cM) Marker Identity View Maps
Xcdo1454 RFLP 32.3 Oat - Oat, KxO, 2003 - 2 CDO1454 RFLP 26.2 (cM) Marker Identity View Maps
Oat - Cornell Diploid 1995 - D CDO1454 RFLP 34.6 (cM) Marker Identity View Maps
Xbcd1851C RFLP 10.1 Oat - Oat, KxO, 2003 - 17 bcd1851b RFLP 16.6 (cM) Marker Identity View Maps
Oryza sativa japonica - Gramene Annot Seq 2009 - Chr. 5 BCD1851 RFLP 5,508,715 - 5,508,746 (bp) Marker Identity View Maps
Oat - Oat, KxO, 2003 - 30 bcd1851a RFLP 11.6 (cM) Marker Identity View Maps
Oryza sativa japonica - Gramene Annot Seq 2009 - Chr. 5 BCD1851 RFLP 5,638,959 - 5,639,102 (bp) Marker Identity View Maps
Oryza sativa japonica - Gramene Annot Seq 2009 - Chr. 5 BCD1851 RFLP 5,638,460 - 5,638,603 (bp) Marker Identity View Maps
Oat - Oat, KxO, 2003 - 2 bcd1851c RFLP 12.2 (cM) Marker Identity View Maps
Oat - Oat, KxO, 2003 - 3+38 bcd1851d RFLP 74.1 (cM) Marker Identity View Maps
Xbcd342A RFLP 4.3 Wheat - Composite 2004 - 6D Xbcd342.3 RFLP 10 (cM) Marker Identity View Maps
Wheat - Composite 2004 - 6A Xbcd342.1 RFLP 12 (cM) Marker Identity View Maps
Barley - Barley consensus 2003 - 6H BCD342 RFLP 7.2 (cM) Marker Identity View Maps
Wheat - Cornell Synthetic/Opata 1995 - 6A Xbcd342-6A RFLP -85.5 (cM) Marker Identity View Maps
Wheat - Synthetic/Opata RI RFLP/SSR QT - 6B Xbcd342-6B RFLP -53.5 (cM) Marker Identity View Maps
Wheat - Synthetic/Opata RI RFLP/SSR QT - 6A Xbcd342-6A RFLP -85.5 (cM) Marker Identity View Maps
Wheat - Wheat composite QTL 2004 - 6B Xbcd342A RFLP 72 (cM) Marker Identity View Maps
Wheat - Wheat composite QTL 2004 - 6A Xbcd342.1 RFLP 12 (cM) Marker Identity View Maps
Oat - Oat, KxO, 2003 - 2 bcd342a RFLP 8.56 (cM) Marker Identity View Maps
Oat - Oat, KxO, 2003 - 3+38 BCD342B RFLP 73.8 (cM) Marker Identity View Maps
Wheat - Synthetic/Opata RI RFLP/SSR QT - 6D Xbcd342-6D RFLP -74.5 (cM) Marker Identity View Maps
Oat - Cornell Diploid 1995 - A BCD342 RFLP 108.7 (cM) Marker Identity View Maps
Wheat - Cornell Synthetic/Opata 1995 - 6D Xbcd342-6D RFLP -74.5 (cM) Marker Identity View Maps
Oryza sativa japonica - Gramene Annot Seq 2009 - Chr. 2 BCD342 RFLP 206,746 - 207,194 (bp) Marker Identity View Maps
Wheat - Composite 2004 - 6B Xbcd342A RFLP 72 (cM) Marker Identity View Maps
Wheat - Cornell Synthetic/Opata 1995 - 6B Xbcd342-6B RFLP -53.5 (cM) Marker Identity View Maps
Wheat - Wheat composite QTL 2004 - 6D Xbcd342.3 RFLP 10 (cM) Marker Identity View Maps
Xcdo1342 RFLP 26 Oat - Oat, KxO, 2003 - 2 CDO1342 RFLP 27.8 (cM) Marker Identity View Maps
Xumn388 RFLP 12.9 Maize - UMC 1998 - 5 UMN388 RFLP 86.7 (cM) Marker Identity View Maps
Maize - Maize Bins QTL 2005 - 5 Bin 5.03 Maize Bin 55 - 86.7 (cM) Maize bin marker View Maps
Oryza sativa japonica - Gramene Annot Seq 2009 - Chr. 2 UMN388 RFLP 2,617,820 - 2,618,672 (bp) Marker Identity View Maps
Maize - IBM2 2008 Neighbors - 5 umn388 Probed site 301.6 (cM) maizegdb_to_gramene View Maps
Maize - Bins - 5 Bin 5.03 Maize Bin 55 - 86.7 (bins) Maize bin marker View Maps
Oat - Oat, KxO, 2003 - 2 UMN388 RFLP 14.6 (cM) Marker Identity View Maps
Xcdo1466 RFLP 0 Oat - Oat, KxO, 2003 - 2 CDO1466 RFLP 5.28 (cM) Marker Identity View Maps
Oat - Cornell Diploid 1995 - D CDO1466 RFLP 30.2 (cM) Marker Identity View Maps
Xbcd1882C RFLP 15.6 Oat - Oat, KxO, 2003 - 36 bcd1882b RFLP 16.2 (cM) Marker Identity View Maps
Oryza sativa japonica - Gramene Annot Seq 2009 - Chr. 2 BCD1882 RFLP 3,507,163 - 3,508,143 (bp) Marker Identity View Maps
Oat - Oat, KxO, 2003 - 2 bcd1882c RFLP 16.2 (cM) Marker Identity View Maps
Oat - Oat, KxO, 2003 - 45 bcd1882a RFLP 0 (cM) Marker Identity View Maps
Oat - Cornell Diploid 1995 - B BCD1882 RFLP 86 (cM) Marker Identity View Maps
AQDF115 QTL 52.5 - 55.5 Oat - Oat, KxO, 2003 - 2 BCD1779 RFLP 37.4 (cM) qtl_marker View Maps
Oat - Oat, KxO, 2003 - 17 cdo539c RFLP 16.6 (cM) qtl_marker View Maps
Oat - Oat, KxO, 2003 - 2 CDO539a RFLP 36.1 (cM) qtl_marker View Maps
Wheat - Cornell Synthetic/Opata 1995 - 2B Xbcd1779-2B RFLP 102.2 (cM) qtl_marker View Maps
Oryza sativa x Oryza longistaminata - Cornell RFLP 1994 - 4 BCD1779 RFLP 67.9 (cM) qtl_marker View Maps
Oryza sativa japonica - Gramene Annot Seq 2009 - Chr. 4 CDO539 RFLP 31,279,063 - 31,279,523 (bp) qtl_marker View Maps
Oryza sativa japonica - Gramene Annot Seq 2009 - Chr. 4 BCD1779 RFLP 30,615,688 - 30,616,009 (bp) qtl_marker View Maps
Oryza sativa x Oryza longistaminata - Cornell RFLP 2001 - 4 CDO539X RFLP 71.95 (cM) qtl_marker View Maps
Maize - Cornell Wilson 1999 - 10 CDO539a RFLP 145.1 (cM) qtl_marker View Maps
Oat - Cornell Diploid 1995 - D BCD1779 RFLP 42.2 (cM) qtl_marker View Maps
Oat - Cornell Diploid 1995 - B CDO539 RFLP 30.4 (cM) qtl_marker View Maps
Oryza sativa x Oryza longistaminata - Cornell RFLP 2001 - 4 BCD1779 RFLP 61.75 (cM) qtl_marker View Maps
Wheat - Synthetic/Opata RI RFLP/SSR QT - 2B Xbcd1779-2B RFLP 102.2 (cM) qtl_marker View Maps
Oryza sativa japonica - Gramene Annot Seq 2009 - Chr. 4 BCD1779 RFLP 30,616,520 - 30,617,297 (bp) qtl_marker View Maps
Oryza sativa - Cornell 9024/LH422 RI QTL 1996 - 4 CDO539 RFLP 11.7 (cM) qtl_marker View Maps
Wheat - Wheat composite QTL 2004 - 2B Xbcd1779 RFLP 88 (cM) qtl_marker View Maps
Wheat - Composite 2004 - 2B Xbcd1779 RFLP 88 (cM) qtl_marker View Maps
Oryza sativa x Oryza longistaminata - Cornell RFLP 1994 - 4 CDO539X RFLP 88.9 (cM) qtl_marker View Maps
AQDF114 QTL 24.5 - 27.5 Oat - Oat, KxO, 2003 - 36 bcd1882b RFLP 16.2 (cM) qtl_marker View Maps
Oryza sativa japonica - Gramene Annot Seq 2009 - Chr. 2 BCD1882 RFLP 3,507,163 - 3,508,143 (bp) qtl_marker View Maps
Oat - Oat, KxO, 2003 - 2 CDO1342 RFLP 27.8 (cM) qtl_marker View Maps
Oat - Oat, KxO, 2003 - 2 bcd1882c RFLP 16.2 (cM) qtl_marker View Maps
Oat - Oat, KxO, 2003 - 45 bcd1882a RFLP 0 (cM) qtl_marker View Maps
Oat - Cornell Diploid 1995 - B BCD1882 RFLP 86 (cM) qtl_marker View Maps
Oat - Oat, KxO, 2003 - 2 CDO1454 RFLP 26.2 (cM) qtl_marker View Maps
Oat - Cornell Diploid 1995 - D CDO1454 RFLP 34.6 (cM) qtl_marker View Maps