grain_iconCMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Saved Links | Help | Tutorial  
*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Oryza sativa-Morph 2000
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps 6
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Gene
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
IAGP
Marker Identity
ISS
Wheat EST Breakpoint Interval
Amplified segment
Maize bin marker
centromeric_marker
Clone end
Collinear block
Constituent clone
contained_in_sequence
EST cluster
hybridisation
maizegdb_to_gramene
Mapped contig to clone
mate_pair
qtl_marker
related_probe
related_sequence
Shared sequence
Shared synonym
Source sequence
Subclone
Synteny
Synteny block
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Oryza sativa - Hokkaido Morphological 2000 [ View Map Set Info ]
Map Name: 6
Map Start: 0 cM
Map Stop: 139 cM
Features by Type:
75 Gene
75 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 75.       of 3 | Next
Oryza sativa - Hokkaido Morphological 2000 - 6
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
Fl1 Gene 67 Oryza sativa - Gramene IRGSP Assm 2005 - Chr. 6 AB041840 Genomic DNA 9,334,212 - 9,339,025 (bp) ISS View Maps
Oryza sativa japonica - Gramene Annot Seq 2009 - Chr. 6 LOC_Os06g16370 Gene Prediction 9,335,360 - 9,337,644 (bp) ISS View Maps
Oryza sativa - Gramene IRGSP Assm 2005 - Chr. 6 AB041838 mRNA 9,335,377 - 9,336,363 (bp) ISS View Maps
Oryza sativa japonica - Gramene Annot Seq 2009 - Chr. 6 Fl1 Gene 9,335,360 - 9,337,644 (bp) Marker Identity View Maps
Oryza sativa - JRGP Nip/Kas F2 QTL 2000 - 6 CQAK13 QTL 54.1 (cM) ISS View Maps
Oryza sativa japonica - Gramene Annot Seq 2009 - Chr. 6 CQAK13-DTHD QTL 9,282,505 - 9,327,178 (bp) ISS View Maps
Brachypodium distachyon - Brachypodium distachyon 1.0 - Chr. 3 AB041838 mRNA 49,878,529 - 49,878,777 () ISS View Maps
Oryza sativa - Gramene IRGSP Assm 2005 - Chr. 6 AB041837 Genomic DNA 9,334,212 - 9,339,025 (bp) ISS View Maps
Brachypodium distachyon - Brachypodium distachyon 1.0 - Chr. 1 AB041838 mRNA 41,483,639 - 41,485,899 () ISS View Maps
Oryza sativa - JRGP RFLP 2000 - 6 Fl1 Gene 54.3 - 54.9 (cM) Marker Identity View Maps
Oryza sativa - Gramene IRGSP Assm 2005 - Chr. 6 AB041841 Genomic DNA 9,334,212 - 9,339,025 (bp) ISS View Maps
Oryza sativa - JRGP Nip/Kas F2 QTL 2000 - 6 CQAK3 QTL 54.1 (cM) ISS View Maps
Oryza sativa - Gramene IRGSP Assm 2005 - Chr. 6 AB041838 mRNA 9,337,001 - 9,337,570 (bp) ISS View Maps
Oryza sativa - JRGP Nip/Kas F2 QTL 2000 - 6 CQAK1 QTL 54.1 (cM) ISS View Maps
Oryza sativa japonica - Gramene Annot Seq 2009 - Chr. 6 CQAK3-DTHD QTL 9,282,505 - 9,327,178 (bp) ISS View Maps
Brachypodium distachyon - Brachypodium distachyon 1.0 - Chr. 4 AB041838 mRNA 19,434,910 - 19,434,944 () ISS View Maps
Oryza sativa - Gramene IRGSP Assm 2005 - Chr. 6 AB041839 Genomic DNA 9,334,212 - 9,339,025 (bp) ISS View Maps
Oryza sativa japonica - Gramene Annot Seq 2009 - Chr. 6 AB041838 mRNA 9,335,377 - 9,337,570 (bp) ISS View Maps
Oryza sativa japonica - Gramene Annot Seq 2009 - Chr. 6 CQAK1-DTHD QTL 9,282,505 - 9,327,178 (bp) ISS View Maps
Fl8 Gene 44 - 90 Oryza sativa x Oryza longistaminata - Cornell RFLP 2001 - 6 Fl8 Gene 38.95 - 52.95 (cM) Marker Identity View Maps
Oryza sativa japonica - Gramene Annot Seq 2009 - Chr. 6 LOC_Os06g40080 Gene Prediction 23,852,717 - 23,857,064 (bp) ISS, IAGP View Maps
Oryza sativa japonica - Gramene Annot Seq 2009 - Chr. 6 Fl8 Gene 23,852,717 - 23,857,064 (bp) Marker Identity View Maps
fl16 Gene 8 - 36 No other positions
st1 Gene 65 No other positions
alk Gene 56 Oryza sativa japonica - Gramene Annot Seq 2009 - Chr. 6 AQBP006-ALKDIG QTL 9,282,505 - 9,284,228 (bp) ISS View Maps
Oryza sativa - IGCN ZYQ18/JX17 DH QTL 1998 - 6 AQBP006 QTL 65 (cM) ISS View Maps
Oryza sativa - JRGP Nip/Kas F2 QTL 2000 - 6 alk Gene 37.3 (cM) Marker Identity View Maps
Oryza sativa - JRGP RFLP 2000 - 6 alk Gene 37.3 (cM) Marker Identity View Maps
chl4 Gene 82 No other positions
chl7 Gene 54 - 80 Oryza sativa - Cornell SSR 2001 - 6 chl7 Gene 17.8 - 59.6 (cM) Marker Identity View Maps
Oryza sativa x Oryza longistaminata - Cornell RFLP 2001 - 6 chl7 Gene 18.05 - 59.85 (cM) Marker Identity View Maps
Cinf Gene 41 No other positions
d4 Gene 0 No other positions
d9 Gene 76 No other positions
d21 Gene 13.7 - 30.3 Oryza sativa - IGCN 1998 - 6 d21 Gene 0.2 - 16.8 (cM) Marker Identity View Maps
drp6 Gene 11 - 77 No other positions
PI I Gene 40 - 98 No other positions
Piz Gene 69 Oryza sativa x Oryza rufipogon - Huazhong RFLP 1997 - 6 Piz Gene 63.7 - 67.9 (cM) Marker Identity View Maps
fs1 Gene 95 No other positions
gf1 Gene 80 No other positions
IPl2 Gene 0 - 19 No other positions
IPl4 Gene 9 No other positions
Pi8 Gene 98 No other positions
Pi9 Gene 0 - 139 No other positions
Pi13 Gene 16 - 90 No other positions
dp1 Gene 24 Oryza sativa - JRGP RFLP 2000 - 6 dp1 Gene 0 - 15.5 (cM) Marker Identity View Maps
Oryza sativa x Oryza rufipogon - Huazhong RFLP 1997 - 6 dp1 Gene 0 - 11 (cM) Marker Identity View Maps
rcn1 Gene 77 No other positions
rcn5 Gene 22 - 66 No other positions
bc4 Gene 9 No other positions