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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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Map Set Oryza sativa-Gramene IRGSP Assm 2005
(Reference Set)
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Maps Chr. 11
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Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Clone
EST
FPC
Genomic DNA
mRNA
RFLP
Other
 
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Features:		 No Yes
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 Correspondence Options
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Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
IAGP
Marker Identity
ISS
Wheat EST Breakpoint Interval
Amplified segment
Maize bin marker
centromeric_marker
Clone end
Collinear block
Constituent clone
contained_in_sequence
EST cluster
hybridisation
maizegdb_to_gramene
Mapped contig to clone
mate_pair
qtl_marker
related_probe
related_sequence
Shared sequence
Shared synonym
Source sequence
Subclone
Synteny
Synteny block
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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Size of Dot Plot Pixels: 1
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Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
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Sanity Check:		 No Yes
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Map Details

Map Type: Sequence [ View Map Type Info ]
Map Set Name: Oryza sativa - Gramene IRGSP Assm 2005 [ View Map Set Info ]
Map Name: Chr. 11
Map Start: 0 bp
Map Stop: 30,827,165 bp
Features by Type:
7,254 Clone
1 EST
434 FPC
24 Genomic DNA
294 mRNA
282 RFLP
8,289 Total

Map Features

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Items 1 to 25 of 8,289.       of 332 | Next
Oryza sativa - Gramene IRGSP Assm 2005 - Chr. 11
(Click headers to resort)		 Comparative Maps
Feature Type Position (bp) Map Feature Type Position Evidence Actions
U31766 mRNA 692,858 - 693,281 No other positions
U31766 mRNA 692,351 - 692,768 No other positions
AB034748 mRNA 30,743,793 - 30,743,984 No other positions
AB034748 mRNA 30,744,098 - 30,744,396 No other positions
AB034748 mRNA 30,744,496 - 30,744,568 No other positions
AB034748 mRNA 30,743,235 - 30,743,707 No other positions
AB034698 mRNA 30,741,571 - 30,741,828 No other positions
AB034698 mRNA 30,742,861 - 30,743,142 No other positions
AB034698 mRNA 30,743,235 - 30,743,707 No other positions
AB034698 mRNA 30,743,793 - 30,743,984 No other positions
AB034698 mRNA 30,744,098 - 30,744,396 No other positions
AB034698 mRNA 30,744,496 - 30,744,586 No other positions
AB034748 mRNA 30,741,571 - 30,741,828 No other positions
AB034748 mRNA 30,742,431 - 30,742,515 No other positions
AB034748 mRNA 30,742,861 - 30,743,142 No other positions
AB026561 mRNA 25,784,241 - 25,784,321 No other positions
AB026561 mRNA 25,784,648 - 25,784,729 No other positions
AB026561 mRNA 25,784,877 - 25,784,979 No other positions
AB026561 mRNA 25,780,828 - 25,781,152 No other positions
AB026561 mRNA 25,781,252 - 25,781,317 No other positions
AB026561 mRNA 25,781,709 - 25,781,811 No other positions
AB026561 mRNA 25,782,470 - 25,782,528 No other positions
AB026561 mRNA 25,782,993 - 25,783,094 No other positions
AB026561 mRNA 25,783,176 - 25,783,289 No other positions
U27098 mRNA 3,361,305 - 3,361,730 No other positions