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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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Map Set Oryza sativa japonica-Gramene Annot Seq 2009
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Maps Chr. 9
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Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Collinear block
EST
EST Cluster
Gene
Gene Prediction
Genomic DNA
GSS
mRNA
OVERGO
QTL
RFLP
SSR
STS
Synteny block
Other
 
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Features:		 No Yes
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Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
IAGP
Marker Identity
ISS
Wheat EST Breakpoint Interval
Amplified segment
Maize bin marker
centromeric_marker
Clone end
Collinear block
Constituent clone
contained_in_sequence
EST cluster
hybridisation
maizegdb_to_gramene
Mapped contig to clone
mate_pair
qtl_marker
related_probe
related_sequence
Shared sequence
Shared synonym
Source sequence
Subclone
Synteny
Synteny block
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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Size of Dot Plot Pixels: 1
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Sanity Check:		 No Yes
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Map Details

Map Type: Sequence [ View Map Type Info ]
Map Set Name: Oryza sativa japonica - Gramene Annotated Nipponbare Sequence 2009 [ View Map Set Info ]
Map Name: Chr. 9
Map Start: 1 bp
Map Stop: 22,938,232 bp
Features by Type:
1 Collinear block
930 EST
1,258 EST Cluster
35 Gene
4 Gene Prediction
33 Genomic DNA
19 GSS
486 mRNA
29 OVERGO
483 QTL
446 RFLP
1,248 SSR
4 STS
28 Synteny block
5,004 Total

Map Features

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Items 1 to 25 of 5,004.       of 201 | Next
Oryza sativa japonica - Gramene Annotated Nipponbare Sequence 2009 - Chr. 9
(Click headers to resort)		 Comparative Maps
Feature Type Position (bp) Map Feature Type Position Evidence Actions
RM23944 SSR 7,871,129 - 7,871,492 No other positions
RM23945 SSR 7,874,216 - 7,874,340 No other positions
RM23946 SSR 7,887,511 - 7,887,699 No other positions
RM23948 SSR 7,945,419 - 7,945,794 No other positions
RM23949 SSR 7,954,865 - 7,955,163 No other positions
RM23950 SSR 7,970,188 - 7,970,511 No other positions
RM23951 SSR 7,979,025 - 7,979,302 No other positions
RM24448 SSR 16,699,860 - 16,700,137 No other positions
RM6532 SSR 16,751,255 - 16,751,422 No other positions
RM24451 SSR 16,762,144 - 16,762,341 No other positions
RM24452 SSR 16,771,430 - 16,771,660 No other positions
RM24597 SSR 19,319,911 - 19,320,053 No other positions
RM553 SSR 19,324,739 - 19,324,838 Oryza sativa - Cornell SSR 2001 - 9 RM553 SSR 76.7 (cM) Marker Identity View Maps
Oryza sativa - IRMI 2003 - 9 RM553 SSR 74.7 (cM) Marker Identity View Maps
Oryza sativa - CNHAU Zhen97/ H94 QTL 2005 - 9 RM553 SSR 73.6 (cM) Marker Identity View Maps
Oryza sativa - Cornell IR64/Azu DH QTL 2001 - 9 AQGP021 QTL 73.3 - 99.4 (cM) qtl_marker View Maps
Oryza sativa - Cornell IR64/Azu DH QTL 2001 - 9 RM553 SSR 76.7 (cM) Marker Identity View Maps
RM24599 SSR 19,367,997 - 19,368,247 No other positions
RM24600 SSR 19,385,331 - 19,385,696 No other positions
RM24602 SSR 19,410,994 - 19,411,137 No other positions
RM24603 SSR 19,430,182 - 19,430,621 No other positions
RM24604 SSR 19,468,388 - 19,468,567 No other positions
RM23990 SSR 8,882,533 - 8,882,851 No other positions
RM23994 SSR 8,940,103 - 8,940,350 No other positions
RM23996 SSR 8,956,633 - 8,956,961 No other positions
RM23998 SSR 8,985,170 - 8,985,419 No other positions
RM23999 SSR 9,023,632 - 9,023,920 No other positions
RM24000 SSR 9,048,724 - 9,049,020 No other positions
RM24001 SSR 9,105,519 - 9,105,776 No other positions