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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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Map Set Oryza sativa japonica-Gramene Annot Seq 2009
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Maps Chr. 8
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Feature Types:
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Correspondence		 Always Display
EST
EST Cluster
Gene
Gene Prediction
Genomic DNA
GSS
mRNA
OVERGO
QTL
RFLP
SSR
STS
Synteny block
Other
 
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Score		 Score
IAGP
Marker Identity
ISS
Wheat EST Breakpoint Interval
Amplified segment
Maize bin marker
centromeric_marker
Clone end
Collinear block
Constituent clone
contained_in_sequence
EST cluster
hybridisation
maizegdb_to_gramene
Mapped contig to clone
mate_pair
qtl_marker
related_probe
related_sequence
Shared sequence
Shared synonym
Source sequence
Subclone
Synteny
Synteny block
 
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Map Details

Map Type: Sequence [ View Map Type Info ]
Map Set Name: Oryza sativa japonica - Gramene Annotated Nipponbare Sequence 2009 [ View Map Set Info ]
Map Name: Chr. 8
Map Start: 1 bp
Map Stop: 28,406,281 bp
Features by Type:
195 EST
1,504 EST Cluster
32 Gene
2 Gene Prediction
40 Genomic DNA
14 GSS
563 mRNA
17 OVERGO
611 QTL
476 RFLP
1,561 SSR
12 STS
57 Synteny block
5,084 Total

Map Features

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Items 1 to 25 of 5,084.       of 204 | Next
Oryza sativa japonica - Gramene Annotated Nipponbare Sequence 2009 - Chr. 8
(Click headers to resort)		 Comparative Maps
Feature Type Position (bp) Map Feature Type Position Evidence Actions
RM22260 SSR 724,654 - 725,178 No other positions
RM22261 SSR 730,462 - 730,556 No other positions
RM22262 SSR 745,864 - 745,933 No other positions
RM22263 SSR 747,835 - 747,952 No other positions
RM23172 SSR 21,075,390 - 21,075,885 No other positions
RM23173 SSR 21,075,912 - 21,076,202 No other positions
RM23174 SSR 21,077,625 - 21,077,891 Oryza sativa - CIAT SSR 2006 - 8 RM23174 SSR 104.1 (cM) Marker Identity View Maps
RM23175 SSR 21,087,520 - 21,087,662 Oryza sativa - CIAT SSR 2006 - 8 RM23175 SSR 104.1 (cM) Marker Identity View Maps
RM3819 SSR 3,015,113 - 3,015,208 No other positions
RM22397 SSR 3,084,914 - 3,085,184 No other positions
RM22399 SSR 3,100,995 - 3,101,392 No other positions
RM22400 SSR 3,116,394 - 3,116,707 No other positions
RM23612 SSR 28,065,791 - 28,065,943 No other positions
RM477 SSR 28,075,215 - 28,075,494 Oryza sativa - Cornell IR64/Azu DH QTL 2001 - 8 AQA010 QTL 114.9 - 128.6 (cM) qtl_marker View Maps
Oryza sativa - Cornell SSR 2001 - 8 RM477 SSR 121.8 - 124.6 (cM) Marker Identity View Maps
Oryza sativa - Cornell IR64/Azu DH QTL 2001 - 8 RM477 SSR 124.6 (cM) Marker Identity View Maps
Oryza sativa - Cornell IR64/Azu DH QTL 2001 - 8 AQA038 QTL 114.9 - 128.6 (cM) qtl_marker View Maps
Oryza sativa - Cornell IR64/Azu DH QTL 2001 - 8 AQGM023 QTL 128.6 (cM) qtl_marker View Maps
Oryza sativa x Oryza longistaminata - Cornell RFLP 2001 - 8 RM477 SSR 123.6 (cM) Marker Identity View Maps
Oryza sativa - IRMI 2003 - 8 RM477 SSR 120.4 (cM) Marker Identity View Maps
Oryza sativa - CIAT SSR 2006 - 8 RM477 SSR 139 (cM) Marker Identity View Maps
Oryza sativa - CNHAU Zhe/IRAT QTL 2006 - 8 RM477 SSR 118.2 (cM) Marker Identity View Maps
RM23614 SSR 28,080,502 - 28,080,883 No other positions
RM23615 SSR 28,102,442 - 28,102,573 No other positions
RM23616 SSR 28,104,302 - 28,104,942 No other positions
RM23617 SSR 28,107,231 - 28,107,499 No other positions
RM23618 SSR 28,107,231 - 28,107,499 No other positions
RM1111 SSR 4,772,713 - 4,772,897 Oryza sativa - IRMI 2003 - 8 RM1111 SSR 36.8 (cM) Marker Identity View Maps
RM22512 SSR 4,847,633 - 4,847,793 No other positions
RM6421 SSR 4,857,526 - 4,857,861 Oryza sativa - IRMI 2003 - 8 RM6421 SSR 36.8 (cM) Marker Identity View Maps
RM22514 SSR 4,892,788 - 4,893,095 No other positions
RM22515 SSR 4,899,154 - 4,899,328 No other positions
RM22516 SSR 4,946,772 - 4,946,936 No other positions