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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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Map Set Oryza sativa japonica-Gramene Annot Seq 2009
(Reference Set)
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Correspondences
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Maps Chr. 7
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Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
EST
EST Cluster
Gene
Gene Prediction
Genomic DNA
GSS
mRNA
OVERGO
QTL
RFLP
SSR
STS
Synteny block
Other
 
Show Labels: None Landmarks All
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Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
IAGP
Marker Identity
ISS
Wheat EST Breakpoint Interval
Amplified segment
Maize bin marker
centromeric_marker
Clone end
Collinear block
Constituent clone
contained_in_sequence
EST cluster
hybridisation
maizegdb_to_gramene
Mapped contig to clone
mate_pair
qtl_marker
related_probe
related_sequence
Shared sequence
Shared synonym
Source sequence
Subclone
Synteny
Synteny block
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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Map Size: tiny small medium large Custom
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Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
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Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Sequence [ View Map Type Info ]
Map Set Name: Oryza sativa japonica - Gramene Annotated Nipponbare Sequence 2009 [ View Map Set Info ]
Map Name: Chr. 7
Map Start: 1 bp
Map Stop: 29,662,436 bp
Features by Type:
302 EST
1,777 EST Cluster
36 Gene
5 Gene Prediction
40 Genomic DNA
16 GSS
663 mRNA
23 OVERGO
628 QTL
685 RFLP
1,466 SSR
9 STS
79 Synteny block
5,729 Total

Map Features

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Items 1 to 25 of 5,729.       of 230 | Next
Oryza sativa japonica - Gramene Annotated Nipponbare Sequence 2009 - Chr. 7
(Click headers to resort)		 Comparative Maps
Feature Type Position (bp) Map Feature Type Position Evidence Actions
RM20776 SSR 72,127 - 72,222 No other positions
RM20778 SSR 98,837 - 99,010 No other positions
RM20779 SSR 100,885 - 101,072 No other positions
RM21143 SSR 5,101,517 - 5,101,723 No other positions
RM21144 SSR 5,165,948 - 5,166,141 No other positions
RM8262 SSR 5,298,383 - 5,298,487 Oryza sativa - IRMI 2003 - 7 RM8262 SSR 41.7 (cM) Marker Identity View Maps
RM21151 SSR 5,415,548 - 5,415,656 No other positions
RM21510 SSR 15,603,452 - 15,603,574 No other positions
RM21511 SSR 15,643,981 - 15,644,176 No other positions
RM21512 SSR 15,649,620 - 15,649,806 No other positions
RM21513 SSR 15,691,452 - 15,691,787 No other positions
RM21514 SSR 15,717,248 - 15,717,536 No other positions
RM5543 SSR 15,752,162 - 15,752,288 Oryza sativa - CIAT SSR 2006 - 7 RM5543 SSR 76.3 (cM) Marker Identity View Maps
RM21516 SSR 15,865,325 - 15,865,562 No other positions
RM21868 SSR 23,523,206 - 23,523,414 No other positions
RM21869 SSR 23,526,246 - 23,526,345 No other positions
RM6047 SSR 741,874 - 742,035 Oryza sativa - IRMI 2003 - 7 RM6047 SSR 3.9 (cM) Marker Identity View Maps
RM20847 SSR 769,483 - 769,642 No other positions
RM20848 SSR 806,127 - 806,737 No other positions
RM20852 SSR 902,040 - 902,182 No other positions
RM21692 SSR 19,502,956 - 19,503,098 No other positions
RM21693 SSR 19,510,426 - 19,510,888 No other positions
RM21694 SSR 19,512,784 - 19,513,166 No other positions
RM21695 SSR 19,537,645 - 19,537,908 No other positions
RM21700 SSR 19,582,589 - 19,582,839 No other positions