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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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Map Set Oryza sativa japonica-Gramene Annot Seq 2009
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Maps Chr. 12
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Feature Types:
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Correspondence		 Always Display
EST
EST Cluster
Gene
Gene Prediction
Genomic DNA
GSS
mRNA
OVERGO
QTL
RFLP
SSR
STS
Synteny block
Other
 
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Include Correspondence Types:
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Score		 Score
IAGP
Marker Identity
ISS
Wheat EST Breakpoint Interval
Amplified segment
Maize bin marker
centromeric_marker
Clone end
Collinear block
Constituent clone
contained_in_sequence
EST cluster
hybridisation
maizegdb_to_gramene
Mapped contig to clone
mate_pair
qtl_marker
related_probe
related_sequence
Shared sequence
Shared synonym
Source sequence
Subclone
Synteny
Synteny block
 
Aggregate Correspondences: No 1 Line 2 Lines
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View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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Map Details

Map Type: Sequence [ View Map Type Info ]
Map Set Name: Oryza sativa japonica - Gramene Annotated Nipponbare Sequence 2009 [ View Map Set Info ]
Map Name: Chr. 12
Map Start: 1 bp
Map Stop: 27,489,485 bp
Features by Type:
1,491 EST
1,303 EST Cluster
20 Gene
2 Gene Prediction
41 Genomic DNA
13 GSS
476 mRNA
13 OVERGO
382 QTL
421 RFLP
1,514 SSR
3 STS
28 Synteny block
5,707 Total

Map Features

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Items 1 to 25 of 5,707.       of 229 | Next
Oryza sativa japonica - Gramene Annotated Nipponbare Sequence 2009 - Chr. 12
(Click headers to resort)		 Comparative Maps
Feature Type Position (bp) Map Feature Type Position Evidence Actions
RM27973 SSR 12,266,561 - 12,266,848 Oryza sativa - CIAT SSR 2006 - 12 RM27973 SSR 57.6 (cM) Marker Identity View Maps
RM27978 SSR 12,445,830 - 12,446,122 No other positions
RM27981 SSR 12,469,683 - 12,469,970 No other positions
RM27982 SSR 12,628,094 - 12,628,283 No other positions
RM5939 SSR 10,064,701 - 10,064,928 No other positions
RM27919 SSR 10,078,492 - 10,078,688 No other positions
RM27920 SSR 10,139,067 - 10,139,333 No other positions
RM27923 SSR 10,200,483 - 10,200,874 No other positions
RM27533 SSR 2,609,900 - 2,610,042 No other positions
RM1302 SSR 2,610,625 - 2,610,791 No other positions
RM27535 SSR 2,617,619 - 2,617,805 No other positions
RM453 SSR 2,690,368 - 2,690,528 Oryza sativa - Cornell IR64/Azu DH QTL 2001 - 12 AQGM013 QTL 20.9 - 49.5 (cM) qtl_marker View Maps
Oryza sativa - NDSU EM93/SS18 BC QTL 2004 - 12 RM453 SSR 13.1 (cM) Marker Identity View Maps
Oryza sativa - Cornell IR64/Azu DH QTL 2001 - 12 RM453 SSR 28.2 (cM) Marker Identity View Maps
Oryza sativa - CNHAU Zhe/IRAT QTL 2006 - 12 RM453 SSR 20.5 (cM) Marker Identity View Maps
Oryza sativa - Cornell SSR 2001 - 12 RM453 SSR 28.2 (cM) Marker Identity View Maps
Oryza sativa - Cornell IR64/Azu DH QTL 2001 - 12 AQGP044 QTL 32.3 (cM) qtl_marker View Maps
RM27537 SSR 2,697,282 - 2,697,373 No other positions
RM6262 SSR 2,711,870 - 2,712,036 No other positions
RM27540 SSR 2,836,119 - 2,836,370 No other positions
RM558 SSR 1,560,195 - 1,560,311 Oryza sativa - IRMI 2003 - 12 RM558A SSR 10 (cM) Marker Identity View Maps
Oryza sativa - Cornell IR64/IRG105 QTL 2003 - 4 RM558 SSR 0 (cM) Marker Identity View Maps
Oryza sativa - NDSU EM93/SS18 BC QTL 2004 - 4 RM558C SSR 0 (cM) Marker Identity View Maps
Oryza sativa - Cornell IR64/IRG105 QTL 2003 - 4 AQED014 QTL 0 - 19.4 (cM) qtl_marker View Maps
RM3483 SSR 1,611,769 - 1,611,935 Oryza sativa - CNHAU Zhe/IRAT QTL 2006 - 12 MRG2483 SSR 15 (cM) Marker Identity View Maps
Oryza sativa - CNHAU Zhen97/ H94 QTL 2005 - 12 MRG2483 SSR 28.7 (cM) Marker Identity View Maps
Oryza sativa - IRMI 2003 - 12 RM3483 SSR 10 (cM) Marker Identity View Maps
RM27488 SSR 1,614,795 - 1,615,311 No other positions
RM27489 SSR 1,615,567 - 1,615,748 No other positions
RM27491 SSR 1,624,774 - 1,625,040 No other positions
RM27492 SSR 1,631,808 - 1,632,085 No other positions
RM27493 SSR 1,631,808 - 1,632,085 No other positions
RM27494 SSR 1,709,899 - 1,709,989 No other positions
RM27498 SSR 1,873,961 - 1,874,268 No other positions
RM27499 SSR 1,935,298 - 1,935,934 No other positions