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Map Set Oryza sativa japonica-Gramene Annot Seq 2009
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Maps Chr. 11
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Correspondence		 Always Display
EST
EST Cluster
Gene
Gene Prediction
Genomic DNA
GSS
mRNA
OVERGO
QTL
RFLP
SSR
STS
Synteny block
Other
 
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IAGP
Marker Identity
ISS
Wheat EST Breakpoint Interval
Amplified segment
Maize bin marker
centromeric_marker
Clone end
Collinear block
Constituent clone
contained_in_sequence
EST cluster
hybridisation
maizegdb_to_gramene
Mapped contig to clone
mate_pair
qtl_marker
related_probe
related_sequence
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Shared synonym
Source sequence
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Map Details

Map Type: Sequence [ View Map Type Info ]
Map Set Name: Oryza sativa japonica - Gramene Annotated Nipponbare Sequence 2009 [ View Map Set Info ]
Map Name: Chr. 11
Map Start: 1 bp
Map Stop: 28,494,054 bp
Features by Type:
1,242 EST
1,097 EST Cluster
19 Gene
2 Gene Prediction
47 Genomic DNA
19 GSS
420 mRNA
15 OVERGO
513 QTL
450 RFLP
1,515 SSR
4 STS
25 Synteny block
5,368 Total

Map Features

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Items 1 to 25 of 5,368.       of 215 | Next
Oryza sativa japonica - Gramene Annotated Nipponbare Sequence 2009 - Chr. 11
(Click headers to resort)		 Comparative Maps
Feature Type Position (bp) Map Feature Type Position Evidence Actions
RM26097 SSR 2,760,390 - 2,760,742 No other positions
RM26101 SSR 2,808,043 - 2,808,240 No other positions
RM26102 SSR 2,810,365 - 2,810,501 No other positions
RM26103 SSR 2,838,441 - 2,838,779 No other positions
RM26104 SSR 2,839,226 - 2,839,443 No other positions
RM26105 SSR 2,840,030 - 2,840,169 Oryza sativa - CIAT SSR 2006 - 11 RM26105 SSR 12.3 (cM) Marker Identity View Maps
RM332 SSR 2,840,213 - 2,840,362 Oryza sativa - M202/IR50 UCD QTL 2003 - 11 AQDU004 QTL 0 - 0.6 (cM) qtl_marker View Maps
Oryza sativa - JHPRC Rei/Yamd QTL 2002 - 11 AQT012 QTL 0 - 32.5 (cM) qtl_marker View Maps
Oryza sativa - CNHAU Zhe/IRAT QTL 2006 - 11 RM332 SSR 13 (cM) Marker Identity View Maps
Oryza sativa - Cornell SSR 2001 - 11 RM332 SSR 27.9 (cM) Marker Identity View Maps
Oryza sativa - M202/IR50 UCD QTL 2003 - 11 CQAA4 QTL 0 - 0.6 (cM) qtl_marker View Maps
Oryza sativa - CNNAU IR50/Tat/Miy QTL 2006 - 11 RM332 SSR 32.6 (cM) Marker Identity View Maps
Oryza sativa - Cornell IR64/Azu DH QTL 2001 - 11 RM332 SSR 27.9 (cM) Marker Identity View Maps
Oryza sativa - JUT Akihi/IRAT109 QTL 2004 - 11 RM332 SSR 17.37 (cM) Marker Identity View Maps
Oryza sativa - Cornell IR64/Azu DH QTL 2001 - 11 AQGP066 QTL 37.5 (cM) qtl_marker View Maps
Oryza sativa - Cornell IR64/Azu DH QTL 2001 - 11 AQGP017 QTL 37.5 (cM) qtl_marker View Maps
Oryza sativa - CNHAU Zhen97/ H94 QTL 2005 - 11 AQGA033 QTL 66.4 - 66.9 (cM) qtl_marker View Maps
Oryza sativa - JHPRC Rei/Yamd QTL 2002 - 11 AQT016 QTL 0 - 72.7 (cM) qtl_marker View Maps
Oryza sativa - CIAT SSR 2006 - 11 RM332 SSR 12.3 (cM) Marker Identity View Maps
Oryza sativa - CNHAU Zhen97/ H94 QTL 2005 - 11 AQGA041 QTL 66.4 - 66.9 (cM) qtl_marker View Maps
Oryza sativa - JHPRC Rei/Yamd QTL 2002 - 11 AQT030 QTL 61.9 - 72.7 (cM) qtl_marker View Maps
Oryza sativa - NDSU EM93/SS18 BC QTL 2004 - 11 RM332 SSR 15.9 (cM) Marker Identity View Maps
Oryza sativa - CNHAU Zhen97/ H94 QTL 2005 - 11 RM332 SSR 15.5 (cM) Marker Identity View Maps
Oryza sativa - JUT Akihi/IRAT109 QTL 2004 - 11 AQFQ005 QTL 0 - 17.4 (cM) qtl_marker View Maps
Oryza sativa - M202/IR50 UCD QTL 2003 - 11 RM332 SSR 11.7 (cM) Marker Identity View Maps
Oryza sativa indica x Oryza nivara - USMSU CL16/80470 QTL 2006 - 11 RM332 SSR 14 (cM) Marker Identity View Maps
Oryza sativa - JHPRC Rei/Yamd QTL 2002 - 11 RM332 SSR 0 (cM) Marker Identity View Maps
Oryza sativa - TKU Integrated QTL 2002 - 11 RM332 SSR 23.4 (cM) Marker Identity View Maps
Oryza sativa - Cornell IR64/Azu DH QTL 2001 - 11 AQGP077 QTL 37.5 (cM) qtl_marker View Maps
RM26160 SSR 3,804,340 - 3,804,533 No other positions
RM26161 SSR 3,804,664 - 3,805,141 No other positions
RM5599 SSR 3,824,353 - 3,824,512 Oryza sativa - IRMI 2003 - 11 RM5599 SSR 19.8 (cM) Marker Identity View Maps
Oryza sativa - JUT Akihi/IRAT109 QTL 2004 - 11 RM5599 SSR 28.87 (cM) Marker Identity View Maps
Oryza sativa - JUT Akihi/IRAT109 QTL 2004 - 11 AQFQ005 QTL 0 - 17.4 (cM) qtl_marker View Maps
Oryza sativa - JUT Akihi/IRAT109 QTL 2004 - 11 AQFQ008 QTL 28.9 - 42.1 (cM) qtl_marker View Maps
RM26164 SSR 3,830,932 - 3,831,609 No other positions
RM1124 SSR 3,851,092 - 3,851,347 Oryza sativa - IRMI 2003 - 11 RM1124 SSR 19.8 (cM) Marker Identity View Maps
RM6544 SSR 3,853,603 - 3,853,777 Oryza sativa - IRMI 2003 - 11 RM6544 SSR 19.8 (cM) Marker Identity View Maps
RM26167 SSR 3,866,679 - 3,867,029 No other positions
RM26860 SSR 19,236,706 - 19,236,971 No other positions
RM26861 SSR 19,292,067 - 19,292,365 No other positions
RM26862 SSR 19,312,281 - 19,312,418 No other positions
RM26863 SSR 19,317,493 - 19,317,834 No other positions
RM26864 SSR 19,328,420 - 19,328,727 No other positions
RM26865 SSR 19,328,420 - 19,328,727 No other positions
RM26866 SSR 19,328,420 - 19,328,727 No other positions
RM26708 SSR 16,507,636 - 16,508,174 No other positions
RM7303 SSR 16,520,895 - 16,521,337 Oryza sativa - IRMI 2003 - 11 RM7303 SSR 64.2 (cM) Marker Identity View Maps
RM6272 SSR 16,524,894 - 16,525,130 Oryza sativa - IRMI 2003 - 11 RM6272 SSR 64.2 (cM) Marker Identity View Maps
RM26712 SSR 16,530,625 - 16,530,889 No other positions