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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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 Map Options
Map Set Brachypodium distachyon-Brachypodium distachyon 1.0
(Reference Set)
Min.
Correspondences
Align Vertically
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Maps Chr. 4
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Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
EST
EST Cluster
Gene Prediction
mRNA
Synteny block
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
IAGP
Marker Identity
ISS
Wheat EST Breakpoint Interval
Amplified segment
Maize bin marker
centromeric_marker
Clone end
Collinear block
Constituent clone
contained_in_sequence
EST cluster
hybridisation
maizegdb_to_gramene
Mapped contig to clone
mate_pair
qtl_marker
related_probe
related_sequence
Shared sequence
Shared synonym
Source sequence
Subclone
Synteny
Synteny block
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Sequence [ View Map Type Info ]
Map Set Name: Brachypodium distachyon - Brachypodium distachyon 1.0 [ View Map Set Info ]
Map Name: Chr. 4
Map Start: 1
Map Stop: 48,608,231
Features by Type:
29,713 EST
15,087 EST Cluster
3,083 Gene Prediction
20,980 mRNA
59 Synteny block
68,922 Total

Map Features

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Items 1 to 25 of 68,922.       of 2,757 | Next
Brachypodium distachyon - Brachypodium distachyon 1.0 - Chr. 4
(Click headers to resort)		 Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
AA051877 EST 43,424,360 - 43,424,424 Maize - UMC 1998 - 5 csu562b(ubi) RFLP 88.4 (cM) contained_in_sequence View Maps
Maize - UMC 1998 - 5 csu377b(ubi) RFLP 86.7 (cM) contained_in_sequence View Maps
Maize - UMC 1998 - 4 csu377a(ubi) RFLP 153.7 (cM) contained_in_sequence View Maps
Sorghum - Paterson 2003 - F CSU377a RFLP 95.4 (cM) contained_in_sequence View Maps
Sorghum - Paterson 2003 - I CSU377b RFLP 33.9 (cM) contained_in_sequence View Maps
AA054789 EST 40,240,997 - 40,241,267 Maize - FPC maize May 2006 - ctg419 SOG1057 OVERGO 200 (bands) contained_in_sequence View Maps
Maize - AGI FPC Oct 2004 - ctg10 SOG1057 OVERGO 512 - 546 (bands) contained_in_sequence View Maps
Maize - AGI FPC Oct 2004 - ctg70 SOG1057 OVERGO 1,075 - 1,082 (bands) contained_in_sequence View Maps
Maize - FPC maize May 2006 - ctg204 SOG1057 OVERGO 859 (bands) contained_in_sequence View Maps
Maize - Curated AGI FPC Oct 2004 - ctg35.1 ntf1 RFLP 12 - 26 (bands) related_sequence View Maps
Maize - FPC maize May 2006 - ctg64 SOG1057 OVERGO 40 (bands) contained_in_sequence View Maps
Maize - FPC maize May 2006 - ctg57 SOG1057 OVERGO 722 (bands) contained_in_sequence View Maps
Maize - AGI FPC Oct 2004 - ctg409 SOG1057 OVERGO 406 - 420 (bands) contained_in_sequence View Maps
Maize - FPC maize May 2006 - ctg44 SOG1057 OVERGO 1,533 (bands) contained_in_sequence View Maps
Maize - AGI FPC Oct 2004 - ctg38 SOG1057 OVERGO 1,519 - 1,547 (bands) contained_in_sequence View Maps
Maize - FPC maize May 2006 - ctg248 SOG1057 OVERGO 27 (bands) contained_in_sequence View Maps
Maize - FPC maize May 2006 - ctg41 CSU608 RFLP 21 (bands) related_sequence View Maps
Maize - FPC maize May 2006 - ctg280 SOG1057 OVERGO 65 (bands) contained_in_sequence View Maps
Sorghum - Paterson 2003 - J CSU608 RFLP 25.4 (cM) related_sequence View Maps
Maize - UMC 1998 - 1 ntf1 RFLP 130.1 (cM) related_sequence View Maps
Maize - FPC maize May 2006 - ctg80 SOG1057 OVERGO 1,091 (bands) contained_in_sequence View Maps
Maize - AGI FPC Oct 2004 - ctg55 SOG1057 OVERGO 29 - 44 (bands) contained_in_sequence View Maps
Maize - AGI FPC Oct 2004 - ctg199 SOG1057 OVERGO 848 - 870 (bands) contained_in_sequence View Maps
Maize - FPC maize May 2006 - ctg11 SOG1057 OVERGO 529 (bands) contained_in_sequence View Maps
Maize - AGI FPC Oct 2004 - ctg50 SOG1057 OVERGO 711 - 733 (bands) contained_in_sequence View Maps
Maize - AGI FPC Oct 2004 - ctg243 SOG1057 OVERGO 17 - 33 (bands) contained_in_sequence View Maps
Maize - AGI FPC Oct 2004 - ctg269 SOG1057 OVERGO 47 - 84 (bands) contained_in_sequence View Maps
BE552506 EST 46,600,305 - 46,600,336 No other positions
BE552692 EST 26,848,561 - 26,848,592 No other positions
BE552750 EST 7,913,285 - 7,913,316 No other positions
BE591181 EST 31,882,880 - 31,883,919 Wheat - wEST 2003 - 3B 3BS1-0.33-0.57 Breakpoint Interval -0.57 - -0.33 (Arm fraction) Wheat EST Breakpoint Interval View Maps
Wheat - wEST 2003 - 3D 3DS3-0.24-0.55 Breakpoint Interval -0.55 - -0.24 (Arm fraction) Wheat EST Breakpoint Interval View Maps
Wheat - wEST 2003 - 3A 3AS2-0.23-0.45 Breakpoint Interval -0.45 - -0.23 (Arm fraction) Wheat EST Breakpoint Interval View Maps
BE607324 EST 7,082,533 - 7,085,011 No other positions
BE639062 EST 39,985,255 - 39,985,339 No other positions
BE639369 EST 39,997,553 - 39,997,873 No other positions
BE639987 EST 1,169,118 - 1,169,608 No other positions
BE640114 EST 26,579,571 - 26,579,675 Maize - FPC maize May 2006 - ctg108 umc1613.A RFLP 529 (bands) contained_in_sequence View Maps
Maize - AGI FPC Oct 2004 - ctg98 umc1613 RFLP 452 - 478 (bands) contained_in_sequence View Maps
Maize - Curated AGI FPC Oct 2004 - ctg98.2 umc1613 RFLP 452 - 478 (bands) contained_in_sequence View Maps
Maize - FPC Chr maize May 2006 - 2 umc1613.A RFLP 37,367,401 (bp) contained_in_sequence View Maps
Maize - AGI FPC Oct 2004 - ctg1 umc1613 RFLP 377 - 388 (bands) contained_in_sequence View Maps
Maize - FPC maize May 2006 - ctg1 umc1613 RFLP 410 (bands) contained_in_sequence View Maps
Maize - FPC Chr maize May 2006 - 1 umc1613 RFLP 2,009,001 (bp) contained_in_sequence View Maps
Maize - Curated AGI FPC Oct 2004 - ctg1.1 umc1613 RFLP 377 - 388 (bands) contained_in_sequence View Maps
CO435632 EST 43,430,734 - 43,430,912 No other positions
CO435637 EST 48,382,066 - 48,382,096 No other positions
CO435637 EST 1,023,706 - 1,023,738 No other positions
CO435637 EST 25,801,295 - 25,801,326 No other positions
CO435637 EST 24,337,492 - 24,337,535 No other positions
CO435637 EST 9,282,766 - 9,282,819 No other positions
CO435654 EST 47,719,655 - 47,719,684 No other positions
CO435756 EST 7,941,937 - 7,942,017 No other positions
CO435814 EST 39,065,587 - 39,065,827 No other positions
CO435869 EST 11,288,217 - 11,288,246 No other positions
CO435869 EST 313,289 - 313,323 No other positions
CO435869 EST 34,937,149 - 34,937,184 No other positions
CO435869 EST 20,082,660 - 20,082,703 No other positions
CO435878 EST 883,598 - 884,169 No other positions