grain_iconCMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Saved Links | Help | Tutorial  
*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Brachypodium distachyon-Brachypodium distachyon 1.0
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Chr. 3
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
EST
EST Cluster
Gene Prediction
mRNA
Synteny block
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
IAGP
Marker Identity
ISS
Wheat EST Breakpoint Interval
Amplified segment
Maize bin marker
centromeric_marker
Clone end
Collinear block
Constituent clone
contained_in_sequence
EST cluster
hybridisation
maizegdb_to_gramene
Mapped contig to clone
mate_pair
qtl_marker
related_probe
related_sequence
Shared sequence
Shared synonym
Source sequence
Subclone
Synteny
Synteny block
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: Sequence [ View Map Type Info ]
Map Set Name: Brachypodium distachyon - Brachypodium distachyon 1.0 [ View Map Set Info ]
Map Name: Chr. 3
Map Start: 1
Map Stop: 59,892,321
Features by Type:
27,210 EST
19,718 EST Cluster
4,416 Gene Prediction
28,873 mRNA
121 Synteny block
80,338 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 80,338.       of 3,214 | Next
Brachypodium distachyon - Brachypodium distachyon 1.0 - Chr. 3
(Click headers to resort)		 Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
BE518682 EST 53,712,126 - 53,712,438 No other positions
BE519036 EST 5,879,564 - 5,879,771 No other positions
BE519068 EST 22,550,933 - 22,551,037 No other positions
BE519068 EST 26,475,981 - 26,476,102 No other positions
BE519068 EST 30,858,721 - 30,858,842 No other positions
BE553013 EST 12,897,263 - 12,897,662 No other positions
BE591425 EST 49,041,761 - 49,041,834 Wheat - wEST 2003 - 4A 4AL13-0.59-0.66 Breakpoint Interval 0.59 - 0.66 (Arm fraction) Wheat EST Breakpoint Interval View Maps
Wheat - wEST 2003 - 5B 5BL16-0.79-1.00 Breakpoint Interval 0.79 - 1 (Arm fraction) Wheat EST Breakpoint Interval View Maps
Wheat - wEST 2003 - 5D 5DL5-0.76-1.00 Breakpoint Interval 0.76 - 1 (Arm fraction) Wheat EST Breakpoint Interval View Maps
BE591541 EST 19,119,733 - 19,119,983 Wheat - wEST 2003 - 2A 2AS5-0.78-1.00 Breakpoint Interval -1 - -0.78 (Arm fraction) Wheat EST Breakpoint Interval View Maps
Wheat - wEST 2003 - 5B 5BL16-0.79-1.00 Breakpoint Interval 0.79 - 1 (Arm fraction) Wheat EST Breakpoint Interval View Maps
Wheat - wEST 2003 - 2B 2BL4-0.50-0.89 Breakpoint Interval 0.5 - 0.89 (Arm fraction) Wheat EST Breakpoint Interval View Maps
Wheat - wEST 2003 - 6B 6BS-Sat Breakpoint Interval -1.5 - -1.05 (Arm fraction) Wheat EST Breakpoint Interval View Maps
Wheat - wEST 2003 - 6A 6AS1-0.35-0.65 Breakpoint Interval -0.65 - -0.35 (Arm fraction) Wheat EST Breakpoint Interval View Maps
BE604920 EST 5,182,140 - 5,182,170 Wheat - wEST 2003 - 5B 5BL9-0.76-0.79 Breakpoint Interval 0.76 - 0.79 (Arm fraction) Wheat EST Breakpoint Interval View Maps
BE604975 EST 21,517,022 - 21,519,259 Wheat - wEST 2003 - 5A C-5AL10-0.57* Breakpoint Interval 0 - 0.57 (Arm fraction) Wheat EST Breakpoint Interval View Maps
BE639295 EST 17,453,897 - 17,453,926 No other positions
BE643584 EST 21,325,478 - 21,325,553 No other positions
CO435637 EST 32,179,255 - 32,179,290 No other positions
CO435637 EST 521,560 - 521,600 No other positions
CO435639 EST 7,042,163 - 7,042,222 No other positions
CO435654 EST 39,012,975 - 39,013,004 No other positions
CO435654 EST 59,074,587 - 59,074,617 No other positions
CO435654 EST 7,634,661 - 7,634,695 No other positions
CO435656 EST 3,474,328 - 3,474,460 No other positions
CO435744 EST 42,193,277 - 42,193,409 No other positions
CO435760 EST 50,643,325 - 50,643,357 No other positions
CO435777 EST 1,194,122 - 1,194,483 No other positions
CO435814 EST 41,685,724 - 41,686,100 No other positions
CO435869 EST 1,139,875 - 1,139,908 No other positions
CO435869 EST 41,316,727 - 41,316,761 No other positions