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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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Map Set Brachypodium distachyon-Brachypodium distachyon 1.0
(Reference Set)
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Correspondences
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Maps Chr. 1
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Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
EST
EST Cluster
Gene Prediction
mRNA
Synteny block
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
IAGP
Marker Identity
ISS
Wheat EST Breakpoint Interval
Amplified segment
Maize bin marker
centromeric_marker
Clone end
Collinear block
Constituent clone
contained_in_sequence
EST cluster
hybridisation
maizegdb_to_gramene
Mapped contig to clone
mate_pair
qtl_marker
related_probe
related_sequence
Shared sequence
Shared synonym
Source sequence
Subclone
Synteny
Synteny block
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Sequence [ View Map Type Info ]
Map Set Name: Brachypodium distachyon - Brachypodium distachyon 1.0 [ View Map Set Info ]
Map Name: Chr. 1
Map Start: 1
Map Stop: 74,834,343
Features by Type:
51,169 EST
28,200 EST Cluster
5,955 Gene Prediction
38,224 mRNA
128 Synteny block
123,676 Total

Map Features

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Items 1 to 25 of 123,676.       of 4,948 | Next
Brachypodium distachyon - Brachypodium distachyon 1.0 - Chr. 1
(Click headers to resort)		 Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
AA030713 EST 27,806,069 - 27,806,337 Maize - UMC 1998 - 5 csu377b(ubi) RFLP 86.7 (cM) contained_in_sequence View Maps
Sorghum - Paterson 2003 - I CSU377b RFLP 33.9 (cM) contained_in_sequence View Maps
Maize - UMC 1998 - 4 csu377a(ubi) RFLP 153.7 (cM) contained_in_sequence View Maps
Sorghum - Paterson 2003 - F CSU377a RFLP 95.4 (cM) contained_in_sequence View Maps
BE512435 EST 20,646,552 - 20,646,703 No other positions
BE517914 EST 14,483,957 - 14,483,986 Wheat - wEST 2003 - 3B 3BL10-0.50-0.63 Breakpoint Interval 0.5 - 0.63 (Arm fraction) Wheat EST Breakpoint Interval View Maps
Aegilops tauschii - Dvorak 2009 - 3D BE517914 EST 95.82 (cM) Marker Identity View Maps
BE517914 EST 11,605,237 - 11,605,266 Wheat - wEST 2003 - 3B 3BL10-0.50-0.63 Breakpoint Interval 0.5 - 0.63 (Arm fraction) Wheat EST Breakpoint Interval View Maps
Aegilops tauschii - Dvorak 2009 - 3D BE517914 EST 95.82 (cM) Marker Identity View Maps
BE517914 EST 13,070,985 - 13,071,014 Wheat - wEST 2003 - 3B 3BL10-0.50-0.63 Breakpoint Interval 0.5 - 0.63 (Arm fraction) Wheat EST Breakpoint Interval View Maps
Aegilops tauschii - Dvorak 2009 - 3D BE517914 EST 95.82 (cM) Marker Identity View Maps
BE517914 EST 32,160,040 - 32,160,069 Wheat - wEST 2003 - 3B 3BL10-0.50-0.63 Breakpoint Interval 0.5 - 0.63 (Arm fraction) Wheat EST Breakpoint Interval View Maps
Aegilops tauschii - Dvorak 2009 - 3D BE517914 EST 95.82 (cM) Marker Identity View Maps
BE517914 EST 70,606,744 - 70,606,773 Wheat - wEST 2003 - 3B 3BL10-0.50-0.63 Breakpoint Interval 0.5 - 0.63 (Arm fraction) Wheat EST Breakpoint Interval View Maps
Aegilops tauschii - Dvorak 2009 - 3D BE517914 EST 95.82 (cM) Marker Identity View Maps
BE518686 EST 54,682,890 - 54,683,295 Maize - Curated AGI FPC Oct 2004 - ctg287.7 CL5075_1 EST Cluster 462 - 479 (bands) EST cluster View Maps
Maize - Curated AGI FPC Oct 2004 - ctg199.5 CL5075_1 EST Cluster 949 - 975 (bands) EST cluster View Maps
BE518885 EST 54,682,891 - 54,684,384 Maize - Curated AGI FPC Oct 2004 - ctg287.7 CL5075_1 EST Cluster 462 - 479 (bands) EST cluster View Maps
Maize - Curated AGI FPC Oct 2004 - ctg199.5 CL5075_1 EST Cluster 949 - 975 (bands) EST cluster View Maps
BE519004 EST 32,936,377 - 32,936,416 Maize - AGI FPC Oct 2004 - ctg261 SOG5643 OVERGO 254 - 277 (bands) contained_in_sequence View Maps
Maize - FPC maize May 2006 - ctg83 SOG5643 OVERGO 212 (bands) contained_in_sequence View Maps
Maize - AGI FPC Oct 2004 - ctg138 SOG5643 OVERGO 674 - 693 (bands) contained_in_sequence View Maps
Maize - AGI FPC Oct 2004 - ctg69 SOG5643 OVERGO 293 - 316 (bands) contained_in_sequence View Maps
Maize - AGI FPC Oct 2004 - ctg200 SOG5643 OVERGO 85 - 114 (bands) contained_in_sequence View Maps
Maize - AGI FPC Oct 2004 - ctg70 SOG5643 OVERGO 716 - 751 (bands) contained_in_sequence View Maps
Maize - FPC maize May 2006 - ctg80 SOG5643 OVERGO 733 (bands) contained_in_sequence View Maps
Maize - AGI FPC Oct 2004 - ctg50 SOG5643 OVERGO 2,036 - 2,053 (bands) contained_in_sequence View Maps
Maize - FPC maize May 2006 - ctg166 SOG5643 OVERGO 459 (bands) contained_in_sequence View Maps
Maize - AGI FPC Oct 2004 - ctg413 SOG5643 OVERGO 258 - 279 (bands) contained_in_sequence View Maps
Maize - AGI FPC Oct 2004 - ctg4 SOG5643 OVERGO 110 - 136 (bands) contained_in_sequence View Maps
Maize - FPC maize May 2006 - ctg267 SOG5643 OVERGO 1,643 (bands) contained_in_sequence View Maps
Maize - FPC maize May 2006 - ctg145 SOG5643 OVERGO 683 (bands) contained_in_sequence View Maps
Maize - FPC maize May 2006 - ctg219 SOG5643 OVERGO 1,127 (bands) contained_in_sequence View Maps
Maize - AGI FPC Oct 2004 - ctg203 SOG5643 OVERGO 148 - 166 (bands) contained_in_sequence View Maps
Maize - AGI FPC Oct 2004 - ctg365 SOG5643 OVERGO 1,811 - 1,834 (bands) contained_in_sequence View Maps
Maize - FPC maize May 2006 - ctg79 SOG5643 OVERGO 304 (bands) contained_in_sequence View Maps
Maize - FPC maize May 2006 - ctg36 SOG5643 OVERGO 909 (bands) contained_in_sequence View Maps
Maize - FPC maize May 2006 - ctg182 SOG5643 OVERGO 2,344 (bands) contained_in_sequence View Maps
Maize - AGI FPC Oct 2004 - ctg80 SOG5643 OVERGO 559 - 583 (bands) contained_in_sequence View Maps
Maize - AGI FPC Oct 2004 - ctg172 SOG5643 OVERGO 2,335 - 2,354 (bands) contained_in_sequence View Maps
Maize - FPC maize May 2006 - ctg207 SOG5643 OVERGO 72 (bands) contained_in_sequence View Maps
Maize - FPC maize May 2006 - ctg11 SOG5643 OVERGO 1,274 (bands) contained_in_sequence View Maps
Maize - FPC maize May 2006 - ctg35 SOG5643 OVERGO 99 (bands) contained_in_sequence View Maps
Maize - FPC maize May 2006 - ctg57 SOG5643 OVERGO 2,044 (bands) contained_in_sequence View Maps
Maize - AGI FPC Oct 2004 - ctg30 SOG5643 OVERGO 901 - 918 (bands) contained_in_sequence View Maps
Maize - AGI FPC Oct 2004 - ctg257 SOG5643 OVERGO 170 - 201 (bands) contained_in_sequence View Maps
Maize - AGI FPC Oct 2004 - ctg10 SOG5643 OVERGO 1,262 - 1,287 (bands) contained_in_sequence View Maps
Maize - FPC maize May 2006 - ctg91 SOG5643 OVERGO 571 (bands) contained_in_sequence View Maps
Maize - AGI FPC Oct 2004 - ctg232 SOG5643 OVERGO 1,869 - 1,902 (bands) contained_in_sequence View Maps
Maize - FPC maize May 2006 - ctg238 SOG5643 OVERGO 1,885 (bands) contained_in_sequence View Maps
Maize - AGI FPC Oct 2004 - ctg159 SOG5643 OVERGO 447 - 472 (bands) contained_in_sequence View Maps
Maize - FPC maize May 2006 - ctg4 SOG5643 OVERGO 123 (bands) contained_in_sequence View Maps
Maize - AGI FPC Oct 2004 - ctg213 SOG5643 OVERGO 648 - 679 (bands) contained_in_sequence View Maps
Maize - FPC maize May 2006 - ctg423 SOG5643 OVERGO 268 (bands) contained_in_sequence View Maps
Maize - FPC maize May 2006 - ctg376 SOG5643 OVERGO 1,822 (bands) contained_in_sequence View Maps
Maize - AGI FPC Oct 2004 - ctg73 SOG5643 OVERGO 204 - 221 (bands) contained_in_sequence View Maps
Maize - FPC maize May 2006 - ctg264 SOG5643 OVERGO 185 (bands) contained_in_sequence View Maps
BE519017 EST 62,192,146 - 62,192,251 No other positions
BE519021 EST 63,976,443 - 63,976,474 No other positions
BE519068 EST 64,837,757 - 64,837,878 No other positions
BE519068 EST 35,957,641 - 35,957,759 No other positions
BE519209 EST 20,651,197 - 20,651,258 No other positions
BE519210 EST 20,646,205 - 20,651,664 No other positions
BE519210 EST 20,646,552 - 20,646,746 No other positions
BE530941 EST 27,538,767 - 27,538,871 No other positions
BE552832 EST 63,976,443 - 63,976,475 No other positions
BE552973 EST 9,202,046 - 9,202,079 No other positions
BE552973 EST 18,755,254 - 18,755,297 No other positions
BE552973 EST 14,399,024 - 14,399,069 No other positions
BE553056 EST 69,340,849 - 69,340,881 No other positions
BE575026 EST 54,682,890 - 54,684,470 Maize - Curated AGI FPC Oct 2004 - ctg287.7 CL5075_1 EST Cluster 462 - 479 (bands) EST cluster View Maps
Maize - Curated AGI FPC Oct 2004 - ctg199.5 CL5075_1 EST Cluster 949 - 975 (bands) EST cluster View Maps
BE585769 EST 51,877,475 - 51,877,576 Wheat - wEST 2003 - 5B 5BL14-0.75-0.76 Breakpoint Interval 0.75 - 0.76 (Arm fraction) Wheat EST Breakpoint Interval View Maps
Wheat - wEST 2003 - 5D 5DL1-0.60-0.74 Breakpoint Interval 0.6 - 0.74 (Arm fraction) Wheat EST Breakpoint Interval View Maps