grain_iconCMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Saved Links | Help | Tutorial  
*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Oryza sativa-Class I SSR (93-11) 2005
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps 6
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
SSR
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
IAGP
Marker Identity
ISS
Wheat EST Breakpoint Interval
Amplified segment
Maize bin marker
centromeric_marker
Clone end
Collinear block
Constituent clone
contained_in_sequence
EST cluster
hybridisation
maizegdb_to_gramene
Mapped contig to clone
mate_pair
qtl_marker
related_probe
related_sequence
Shared sequence
Shared synonym
Source sequence
Subclone
Synteny
Synteny block
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: Sequence [ View Map Type Info ]
Map Set Name: Oryza sativa - Class I SSR (93-11) 2005 [ View Map Set Info ]
Map Name: 6
Map Start: 0 bp
Map Stop: 32,891,063 bp
Features by Type:
671 SSR
671 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 671.       of 27 | Next
Oryza sativa - Class I SSR (93-11) 2005 - 6
(Click headers to resort)		 Comparative Maps
Feature Type Position (bp) Map Feature Type Position Evidence Actions
RM22807 SSR 9,328,662 - 9,329,080 No other positions
RM20772 SSR 32,890,915 - 32,891,063 No other positions
RM20771 SSR 32,890,384 - 32,890,559 No other positions
RM20770 SSR 32,887,927 - 32,888,120 No other positions
RM20769 SSR 32,882,360 - 32,882,616 No other positions
RM20768 SSR 32,841,275 - 32,841,446 No other positions
RM20762 SSR 32,776,203 - 32,776,457 No other positions
RM20761 SSR 32,747,233 - 32,747,386 No other positions
RM20760 SSR 32,743,404 - 32,743,597 No other positions
RM20759 SSR 32,743,404 - 32,743,597 No other positions
RM20754 SSR 32,699,076 - 32,699,309 No other positions
RM20744 SSR 32,653,712 - 32,653,782 No other positions
RM20743 SSR 32,616,034 - 32,616,180 No other positions
RM20741 SSR 32,577,490 - 32,577,750 No other positions
RM20731 SSR 32,479,901 - 32,480,092 No other positions
RM20730 SSR 32,466,463 - 32,466,728 No other positions
RM20729 SSR 32,463,986 - 32,464,092 No other positions
RM20708 SSR 32,293,843 - 32,293,990 No other positions
RM20707 SSR 32,256,011 - 32,256,180 No other positions
RM20705 SSR 32,161,423 - 32,161,556 No other positions
RM20699 SSR 32,060,112 - 32,060,253 No other positions
RM20696 SSR 32,042,388 - 32,042,589 No other positions
RM20695 SSR 32,029,716 - 32,030,007 No other positions
RM20692 SSR 32,024,680 - 32,024,862 No other positions
RM20689 SSR 31,994,076 - 31,994,346 No other positions