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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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 Map Options
Map Set Oryza sativa-Class I SSR (IRGSP) 2005
(Reference Set)
Min.
Correspondences
Align Vertically
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Maps 12
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hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
SSR
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
IAGP
Marker Identity
ISS
Wheat EST Breakpoint Interval
Amplified segment
Maize bin marker
centromeric_marker
Clone end
Collinear block
Constituent clone
contained_in_sequence
EST cluster
hybridisation
maizegdb_to_gramene
Mapped contig to clone
mate_pair
qtl_marker
related_probe
related_sequence
Shared sequence
Shared synonym
Source sequence
Subclone
Synteny
Synteny block
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Sequence [ View Map Type Info ]
Map Set Name: Oryza sativa - Class I SSR (IRGSP) 2005 [ View Map Set Info ]
Map Name: 12
Map Start: 0 bp
Map Stop: 27,548,949 bp
Features by Type:
823 SSR
823 Total

Map Features

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Items 1 to 25 of 823.       of 33 | Next
Oryza sativa - Class I SSR (IRGSP) 2005 - 12
(Click headers to resort)		 Comparative Maps
Feature Type Position (bp) Map Feature Type Position Evidence Actions
RM27853 SSR 8,378,849 - 8,379,315 No other positions
RM27861 SSR 8,654,737 - 8,655,332 No other positions
RM27862 SSR 8,654,737 - 8,655,391 No other positions
RM27863 SSR 8,706,152 - 8,706,438 No other positions
RM27871 SSR 8,839,324 - 8,839,523 No other positions
RM27877 SSR 9,180,297 - 9,180,482 No other positions
RM27879 SSR 9,277,746 - 9,278,000 No other positions
RM27880 SSR 9,280,167 - 9,280,839 No other positions
RM27884 SSR 9,288,977 - 9,289,447 No other positions
RM28697 SSR 25,886,774 - 25,887,022 No other positions
RM28698 SSR 25,888,655 - 25,888,870 No other positions
RM28699 SSR 25,916,900 - 25,917,097 No other positions
RM27852 SSR 8,377,988 - 8,378,367 No other positions
RM27851 SSR 8,329,440 - 8,329,911 No other positions
RM27850 SSR 8,326,783 - 8,326,925 No other positions
RM27849 SSR 8,263,458 - 8,263,741 No other positions
RM27848 SSR 8,166,517 - 8,166,993 No other positions
RM27847 SSR 8,144,363 - 8,144,635 No other positions
RM27846 SSR 8,081,355 - 8,081,743 No other positions
RM27842 SSR 8,024,099 - 8,024,276 No other positions
RM27841 SSR 8,023,586 - 8,023,863 No other positions
RM27840 SSR 8,008,719 - 8,009,227 No other positions
RM27839 SSR 8,003,127 - 8,003,394 No other positions
RM27838 SSR 7,997,579 - 7,997,834 No other positions
RM27831 SSR 7,894,923 - 7,895,157 No other positions