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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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 Map Options
Map Set Oryza sativa-Class I SSR (IRGSP) 2005
(Reference Set)
Min.
Correspondences
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Maps 1
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hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
SSR
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
IAGP
Marker Identity
ISS
Wheat EST Breakpoint Interval
Amplified segment
Maize bin marker
centromeric_marker
Clone end
Collinear block
Constituent clone
contained_in_sequence
EST cluster
hybridisation
maizegdb_to_gramene
Mapped contig to clone
mate_pair
qtl_marker
related_probe
related_sequence
Shared sequence
Shared synonym
Source sequence
Subclone
Synteny
Synteny block
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Sequence [ View Map Type Info ]
Map Set Name: Oryza sativa - Class I SSR (IRGSP) 2005 [ View Map Set Info ]
Map Name: 1
Map Start: 0 bp
Map Stop: 43,231,828 bp
Features by Type:
1,575 SSR
1,575 Total

Map Features

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Items 1 to 25 of 1,575.       of 63 | Next
Oryza sativa - Class I SSR (IRGSP) 2005 - 1
(Click headers to resort)		 Comparative Maps
Feature Type Position (bp) Map Feature Type Position Evidence Actions
RM10000 SSR 22,251 - 22,635 No other positions
RM10001 SSR 26,707 - 27,092 No other positions
RM10002 SSR 60,946 - 61,117 No other positions
RM10003 SSR 61,180 - 61,441 No other positions
RM10005 SSR 82,128 - 82,258 No other positions
RM10007 SSR 147,304 - 147,392 No other positions
RM10009 SSR 188,361 - 188,650 No other positions
RM10010 SSR 201,347 - 201,519 No other positions
RM10012 SSR 208,420 - 208,581 No other positions
RM10013 SSR 208,743 - 209,241 No other positions
RM10015 SSR 227,493 - 227,592 No other positions
RM10017 SSR 250,708 - 251,237 No other positions
RM10018 SSR 272,515 - 272,662 No other positions
RM10022 SSR 315,815 - 315,991 No other positions
RM10025 SSR 395,016 - 395,098 No other positions
RM10026 SSR 395,340 - 395,491 No other positions
RM10028 SSR 408,680 - 408,888 No other positions
RM10027 SSR 408,680 - 408,888 No other positions
RM10029 SSR 454,642 - 454,906 No other positions
RM10032 SSR 522,134 - 522,213 No other positions
RM10037 SSR 562,780 - 563,070 No other positions
RM10038 SSR 611,812 - 612,078 No other positions
RM10039 SSR 612,228 - 612,498 No other positions
RM10040 SSR 612,869 - 613,473 No other positions
RM10041 SSR 637,757 - 638,115 No other positions