grain_iconCMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Saved Links | Help | Tutorial  
*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Oryza sativa-Class I SSR (TIGR) 2005
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps 10
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
SSR
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
IAGP
Marker Identity
ISS
Wheat EST Breakpoint Interval
Amplified segment
Maize bin marker
centromeric_marker
Clone end
Collinear block
Constituent clone
contained_in_sequence
EST cluster
hybridisation
maizegdb_to_gramene
Mapped contig to clone
mate_pair
qtl_marker
related_probe
related_sequence
Shared sequence
Shared synonym
Source sequence
Subclone
Synteny
Synteny block
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: Sequence [ View Map Type Info ]
Map Set Name: Oryza sativa - Class I SSR (TIGR) 2005 [ View Map Set Info ]
Map Name: 10
Map Start: 0 bp
Map Stop: 22,679,818 bp
Features by Type:
700 SSR
700 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 700.       of 28 | Next
Oryza sativa - Class I SSR (TIGR) 2005 - 10
(Click headers to resort)		 Comparative Maps
Feature Type Position (bp) Map Feature Type Position Evidence Actions
RM24852 SSR 46,387 - 46,543 No other positions
RM24855 SSR 95,264 - 95,453 No other positions
RM24856 SSR 95,325 - 95,575 No other positions
RM24857 SSR 99,215 - 99,756 No other positions
RM24859 SSR 121,402 - 121,599 No other positions
RM24863 SSR 136,385 - 137,054 No other positions
RM24862 SSR 136,417 - 136,937 No other positions
RM24864 SSR 136,482 - 136,975 No other positions
RM24865 SSR 138,483 - 138,678 No other positions
RM24866 SSR 165,047 - 165,389 No other positions
RM24867 SSR 167,581 - 167,922 No other positions
RM24872 SSR 266,086 - 266,259 No other positions
RM24873 SSR 267,428 - 267,788 No other positions
RM24874 SSR 272,501 - 272,741 No other positions
RM24875 SSR 277,273 - 277,471 No other positions
RM24876 SSR 286,422 - 286,539 No other positions
RM24878 SSR 294,322 - 294,766 No other positions
RM24881 SSR 315,322 - 316,050 No other positions
RM24885 SSR 394,865 - 395,287 No other positions
RM24887 SSR 439,983 - 440,334 No other positions
RM24888 SSR 450,554 - 450,795 No other positions
RM24889 SSR 460,182 - 460,565 No other positions
RM24893 SSR 555,410 - 555,662 No other positions
RM24894 SSR 603,341 - 603,621 No other positions
RM24896 SSR 635,683 - 636,148 No other positions