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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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Map Set Sorghum-TAMU FPC 2004
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Maps ctg2186
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Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
AFLP
SSR
Other
 
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Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
IAGP
Marker Identity
ISS
Wheat EST Breakpoint Interval
Amplified segment
Maize bin marker
centromeric_marker
Clone end
Collinear block
Constituent clone
contained_in_sequence
EST cluster
hybridisation
maizegdb_to_gramene
Mapped contig to clone
mate_pair
qtl_marker
related_probe
related_sequence
Shared sequence
Shared synonym
Source sequence
Subclone
Synteny
Synteny block
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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Size of Dot Plot Pixels: 1
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Same Scale:		 No Yes
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Sanity Check:		 No Yes
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Map Details

Map Type: Physical [ View Map Type Info ]
Map Set Name: Sorghum - TAMU FPC 2004 [ View Map Set Info ]
Map Name: ctg2186
Map Start: 0 bands
Map Stop: 83 bands
Features by Type:
3 AFLP
1 SSR
4 Total

Map Features

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Items 1 to 4 of 4.
Sorghum - TAMU FPC 2004 - ctg2186
(Click headers to resort)		 Comparative Maps
Feature Type Position (bands) Map Feature Type Position Evidence Actions
gap36(01) SSR 38 - 83 Sorghum - UGA BTx623/IS3620C RL SSR RFLP - 1 AQHL021 QTL 86 - 117.5 (cM) qtl_marker View Maps
Sorghum - Klein 2004 - LG-01 gap36 SSR 182.3 - 186.4 (cM) Marker Identity View Maps
Sorghum - UGA BTx623/IS3620C RL SSR RFLP - 1 AQGN001 QTL 128.8 - 138.5 (cM) qtl_marker View Maps
Sorghum - UGA BTx623/IS3620C RL SSR RFLP - 1 AQHL013 QTL 117.5 - 127.1 (cM) qtl_marker View Maps
Sorghum - UGA BTx623/IS3620C RL SSR RFLP - 1 AQGN003 QTL 117.5 - 141.5 (cM) qtl_marker View Maps
Sorghum - UGA BTx623/IS3620C RL SSR RFLP - 1 gap36 SSR 127.1 (cM) Marker Identity View Maps
Sorghum - UGA BTx623/IS3620C RL SSR RFLP - 1 AQHL019 QTL 98.4 - 127.1 (cM) qtl_marker View Maps
Sorghum - UGA BTx623/IS3620C RL SSR RFLP - 1 AQHL001 QTL 127.1 (cM) qtl_marker View Maps
Sorghum - Mace 2009 - 1 gap36 SSR 127.7 - 130 (cM) Marker Identity View Maps
Sorghum - UGA BTx623/IS3620C RL SSR RFLP - 1 AQHL017 QTL 98.4 - 158.3 (cM) qtl_marker View Maps
txa1649 AFLP 38 - 50 No other positions
txa408 AFLP 4 - 45 Sorghum - Klein 2004 - LG-01 txa408 AFLP 183.6 - 186.4 (cM) Marker Identity View Maps
txa6316 AFLP 38 - 58 Sorghum - Klein 2004 - LG-01 txa6316 AFLP 183.6 - 186.4 (cM) Marker Identity View Maps