grain_iconCMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Saved Links | Help | Tutorial  
*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Maize-FPC maize May 2006
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps ctg125
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
Clone
FPC
Genomic DNA
Marker
mRNA
OVERGO
RFLP
STS
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
IAGP
Marker Identity
ISS
Wheat EST Breakpoint Interval
Amplified segment
Maize bin marker
centromeric_marker
Clone end
Collinear block
Constituent clone
contained_in_sequence
EST cluster
hybridisation
maizegdb_to_gramene
Mapped contig to clone
mate_pair
qtl_marker
related_probe
related_sequence
Shared sequence
Shared synonym
Source sequence
Subclone
Synteny
Synteny block
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Physical [ View Map Type Info ]
Map Set Name: Maize - FPC maize May 2006 [ View Map Set Info ]
Map Name: ctg125
Map Start: 0 bands
Map Stop: 1,293 bands
Features by Type:
751 Clone
1 FPC
4 Genomic DNA
2 Marker
1 mRNA
150 OVERGO
9 RFLP
2 STS
920 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 920.       of 37 | Next
Maize - FPC maize May 2006 - ctg125
(Click headers to resort)
Comparative Maps
Feature Type Position (bands) Map Feature Type Position Evidence Actions
ctg125 FPC 1 - 1,293 Maize - FPC Chr maize May 2006 - 3 ctg125 FPC 120,201,901 - 126,537,600 (bp) Marker Identity View Maps
ZMMBBb0153A09 Clone 348 - 372 Maize - Curated AGI FPC Oct 2004 - ctg117.3 b0153A09 Clone 348 - 372 (bands) Marker Identity View Maps
ZMMBBb0353C04 Clone 675 - 699 Maize - Curated AGI FPC Oct 2004 - ctg117.3 b0353C04 Clone 675 - 699 (bands) Marker Identity View Maps
ZMMBBc0541H01 Clone 1,073 - 1,105 Maize - Curated AGI FPC Oct 2004 - ctg117.3 c0541H01 Clone 1,073 - 1,105 (bands) Marker Identity View Maps
ZMMBBb0238G02 Clone 518 - 553 Maize - Curated AGI FPC Oct 2004 - ctg117.3 b0238G02 Clone 518 - 553 (bands) Marker Identity View Maps
ZMMBBb0405L13 Clone 392 - 414 Maize - Curated AGI FPC Oct 2004 - ctg117.3 b0405L13 Clone 392 - 414 (bands) Marker Identity View Maps
ZMMBBc0078B21 Clone 308 - 332 Maize - AGI FPC Oct 2004 - ctg117 dd912 OVERGO 308 - 311 (bands) hybridisation View Maps
Maize - Curated AGI FPC Oct 2004 - ctg117.3 c0078B21 Clone 308 - 332 (bands) Marker Identity View Maps
Maize - AGI FPC Oct 2004 - ctg23 dd912 OVERGO 934 - 973 (bands) hybridisation View Maps
Maize - AGI FPC Oct 2004 - ctg392 dd912 OVERGO 32 - 69 (bands) hybridisation View Maps
Maize - AGI FPC Oct 2004 - ctg344 dd912 OVERGO 2,236 - 2,276 (bands) hybridisation View Maps
ZMMBBb0487E15 Clone 670 - 697 Maize - Curated AGI FPC Oct 2004 - ctg117.3 b0487E15 Clone 670 - 697 (bands) Marker Identity View Maps
ZMMBBb0593P06 Clone 1,005 - 1,026 Maize - Curated AGI FPC Oct 2004 - ctg117.3 b0593P06 Clone 1,005 - 1,026 (bands) Marker Identity View Maps
ZMMBBb0341C22 Clone 34 - 54 Maize - Curated AGI FPC Oct 2004 - ctg117.3 b0341C22 Clone 34 - 54 (bands) Marker Identity View Maps
ZMMBBc0317H19 Clone 525 - 560 Maize - Curated AGI FPC Oct 2004 - ctg117.3 c0317H19 Clone 525 - 560 (bands) Marker Identity View Maps
ZMMBBc0481J16 Clone 723 - 758 Maize - Curated AGI FPC Oct 2004 - ctg117.3 c0481J16 Clone 723 - 758 (bands) Marker Identity View Maps
ZMMBBc0097H12 Clone 216 - 249 Maize - Curated AGI FPC Oct 2004 - ctg117.3 c0097H12 Clone 216 - 249 (bands) Marker Identity View Maps
Maize - AGI FPC Oct 2004 - ctg220 SOG0951 OVERGO 284 - 300 (bands) hybridisation View Maps
Maize - AGI FPC Oct 2004 - ctg264 SOG0951 OVERGO 493 - 530 (bands) hybridisation View Maps
Maize - AGI FPC Oct 2004 - ctg293 SOG0951 OVERGO 380 - 412 (bands) hybridisation View Maps
Maize - AGI FPC Oct 2004 - ctg117 SOG0951 OVERGO 216 - 249 (bands) hybridisation View Maps
Maize - AGI FPC Oct 2004 - ctg6 SOG0951 OVERGO 427 - 455 (bands) hybridisation View Maps
ZMMBBc0343B19 Clone 779 - 803 Maize - Curated AGI FPC Oct 2004 - ctg117.3 c0343B19 Clone 779 - 803 (bands) Marker Identity View Maps
ZMMBBb0431G08 Clone 1,245 - 1,268 Maize - Curated AGI FPC Oct 2004 - ctg117.3 b0431G08 Clone 1,245 - 1,268 (bands) Marker Identity View Maps
ZMMBBb0205F14 Clone 867 - 894 Maize - Curated AGI FPC Oct 2004 - ctg117.3 b0205F14 Clone 867 - 894 (bands) Marker Identity View Maps
ZMMBBb0574C17 Clone 493 - 532 Maize - Curated AGI FPC Oct 2004 - ctg117.3 b0574C17 Clone 493 - 532 (bands) Marker Identity View Maps
ZMMBBc0027E22 Clone 539 - 575 Maize - Curated AGI FPC Oct 2004 - ctg117.3 c0027E22 Clone 539 - 575 (bands) Marker Identity View Maps
ZMMBBb0167A18 Clone 926 - 954 Maize - Curated AGI FPC Oct 2004 - ctg117.3 b0167A18 Clone 926 - 954 (bands) Marker Identity View Maps
ZMMBBb0183E17 Clone 940 - 962 Maize - Curated AGI FPC Oct 2004 - ctg117.3 b0183E17 Clone 940 - 962 (bands) Marker Identity View Maps
ZMMBBc0055D17 Clone 111 - 148 Maize - Curated AGI FPC Oct 2004 - ctg117.3 c0055D17 Clone 111 - 148 (bands) Marker Identity View Maps
ZMMBBb0140E03 Clone 1,143 - 1,167 Maize - Curated AGI FPC Oct 2004 - ctg117.3 b0140E03 Clone 1,143 - 1,167 (bands) Marker Identity View Maps
ZMMBBb0356O12 Clone 700 - 723 Maize - Curated AGI FPC Oct 2004 - ctg117.3 b0356O12 Clone 700 - 723 (bands) Marker Identity View Maps
ZMMBBc0118D05 Clone 525 - 570 Maize - AGI FPC Oct 2004 - ctg362 SOG2201 OVERGO 62 - 2,531 (bands) hybridisation View Maps
Maize - AGI FPC Oct 2004 - ctg279 SOG2201 OVERGO 826 - 922 (bands) hybridisation View Maps
Maize - AGI FPC Oct 2004 - ctg35 SOG2201 OVERGO 606 - 633 (bands) hybridisation View Maps
Maize - AGI FPC Oct 2004 - ctg383 SOG2201 OVERGO 995 - 1,030 (bands) hybridisation View Maps
Maize - AGI FPC Oct 2004 - ctg159 SOG2201 OVERGO 1,017 - 1,048 (bands) hybridisation View Maps
Maize - AGI FPC Oct 2004 - ctg489 SOG2201 OVERGO 964 - 994 (bands) hybridisation View Maps
Maize - AGI FPC Oct 2004 - ctg184 SOG2201 OVERGO 36 - 55 (bands) hybridisation View Maps
Maize - AGI FPC Oct 2004 - ctg301 SOG2201 OVERGO 860 - 862 (bands) hybridisation View Maps
Maize - AGI FPC Oct 2004 - ctg33 SOG2201 OVERGO 51 - 102 (bands) hybridisation View Maps
Maize - AGI FPC Oct 2004 - ctg736 SOG2201 OVERGO 62 - 76 (bands) hybridisation View Maps
Maize - AGI FPC Oct 2004 - ctg433 SOG2201 OVERGO 552 - 571 (bands) hybridisation View Maps
Maize - AGI FPC Oct 2004 - ctg334 SOG2201 OVERGO 467 - 482 (bands) hybridisation View Maps
Maize - AGI FPC Oct 2004 - ctg133 SOG2201 OVERGO 87 - 119 (bands) hybridisation View Maps
Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 1 SOG2201 OVERGO 65,928,205 - 65,928,244 () hybridisation View Maps
Maize - AGI FPC Oct 2004 - ctg429 SOG2201 OVERGO 167 - 190 (bands) hybridisation View Maps
Maize - AGI FPC Oct 2004 - ctg135 SOG2201 OVERGO 230 - 237 (bands) hybridisation View Maps
Maize - AGI FPC Oct 2004 - ctg44 SOG2201 OVERGO 1,142 - 1,161 (bands) hybridisation View Maps
Maize - AGI FPC Oct 2004 - ctg351 SOG2201 OVERGO 134 - 154 (bands) hybridisation View Maps
Maize - AGI FPC Oct 2004 - ctg436 SOG2201 OVERGO 565 - 582 (bands) hybridisation View Maps
Maize - AGI FPC Oct 2004 - ctg95 SOG2201 OVERGO 560 - 587 (bands) hybridisation View Maps
Maize - AGI FPC Oct 2004 - ctg309 SOG2201 OVERGO 562 - 566 (bands) hybridisation View Maps
Maize - AGI FPC Oct 2004 - ctg344 SOG2201 OVERGO 1,829 - 1,831 (bands) hybridisation View Maps
Maize - AGI FPC Oct 2004 - ctg231 SOG2201 OVERGO 319 - 348 (bands) hybridisation View Maps
Maize - AGI FPC Oct 2004 - ctg27 SOG2201 OVERGO 562 - 580 (bands) hybridisation View Maps
Maize - AGI FPC Oct 2004 - ctg8 SOG2201 OVERGO 384 - 695 (bands) hybridisation View Maps
Maize - AGI FPC Oct 2004 - ctg463 SOG2201 OVERGO 18 - 43 (bands) hybridisation View Maps
Maize - AGI FPC Oct 2004 - ctg75 SOG2201 OVERGO 13 - 45 (bands) hybridisation View Maps
Maize - AGI FPC Oct 2004 - ctg167 SOG2201 OVERGO 586 - 605 (bands) hybridisation View Maps
Maize - AGI FPC Oct 2004 - ctg80 SOG2201 OVERGO 2,765 - 4,007 (bands) hybridisation View Maps
Maize - AGI FPC Oct 2004 - ctg424 SOG2201 OVERGO 2,222 - 2,690 (bands) hybridisation View Maps
Maize - AGI FPC Oct 2004 - ctg385 SOG2201 OVERGO 518 - 527 (bands) hybridisation View Maps
Maize - AGI FPC Oct 2004 - ctg501 SOG2201 OVERGO 99 - 130 (bands) hybridisation View Maps
Maize - AGI FPC Oct 2004 - ctg230 SOG2201 OVERGO 230 - 253 (bands) hybridisation View Maps
Maize - AGI FPC Oct 2004 - ctg297 SOG2201 OVERGO 188 - 223 (bands) hybridisation View Maps
Maize - AGI FPC Oct 2004 - ctg339 SOG2201 OVERGO 223 - 259 (bands) hybridisation View Maps
Maize - AGI FPC Oct 2004 - ctg518 SOG2201 OVERGO 389 - 427 (bands) hybridisation View Maps
Maize - AGI FPC Oct 2004 - ctg294 SOG2201 OVERGO 34 - 59 (bands) hybridisation View Maps
Maize - AGI FPC Oct 2004 - ctg122 SOG2201 OVERGO 308 - 344 (bands) hybridisation View Maps
Maize - Curated AGI FPC Oct 2004 - ctg117.3 c0118D05 Clone 525 - 570 (bands) Marker Identity View Maps
Maize - AGI FPC Oct 2004 - ctg67 SOG2201 OVERGO 505 - 593 (bands) hybridisation View Maps
Maize - AGI FPC Oct 2004 - ctg190 SOG2201 OVERGO 352 - 372 (bands) hybridisation View Maps
Maize - AGI FPC Oct 2004 - ctg172 SOG2201 OVERGO 342 - 3,112 (bands) hybridisation View Maps
Maize - AGI FPC Oct 2004 - ctg84 SOG2201 OVERGO 54 - 86 (bands) hybridisation View Maps
Maize - AGI FPC Oct 2004 - ctg282 SOG2201 OVERGO 150 - 184 (bands) hybridisation View Maps
Maize - AGI FPC Oct 2004 - ctg236 SOG2201 OVERGO 498 - 499 (bands) hybridisation View Maps
Maize - AGI FPC Oct 2004 - ctg61 SOG2201 OVERGO 744 - 752 (bands) hybridisation View Maps
Maize - AGI FPC Oct 2004 - ctg38 SOG2201 OVERGO 677 - 699 (bands) hybridisation View Maps
Maize - AGI FPC Oct 2004 - ctg124 SOG2201 OVERGO 942 - 971 (bands) hybridisation View Maps
Maize - AGI FPC Oct 2004 - ctg408 SOG2201 OVERGO 530 - 541 (bands) hybridisation View Maps
Maize - AGI FPC Oct 2004 - ctg491 SOG2201 OVERGO 97 - 98 (bands) hybridisation View Maps
Maize - AGI FPC Oct 2004 - ctg287 SOG2201 OVERGO 78 - 1,226 (bands) hybridisation View Maps
Maize - AGI FPC Oct 2004 - ctg131 SOG2201 OVERGO 541 - 562 (bands) hybridisation View Maps
Maize - AGI FPC Oct 2004 - ctg226 SOG2201 OVERGO 164 - 198 (bands) hybridisation View Maps
Maize - AGI FPC Oct 2004 - ctg303 SOG2201 OVERGO 492 - 595 (bands) hybridisation View Maps
Maize - AGI FPC Oct 2004 - ctg72 SOG2201 OVERGO 459 - 487 (bands) hybridisation View Maps
Maize - AGI FPC Oct 2004 - ctg152 SOG2201 OVERGO 244 - 262 (bands) hybridisation View Maps
Maize - AGI FPC Oct 2004 - ctg141 SOG2201 OVERGO 696 - 701 (bands) hybridisation View Maps
Maize - AGI FPC Oct 2004 - ctg407 SOG2201 OVERGO 813 - 815 (bands) hybridisation View Maps
Maize - AGI FPC Oct 2004 - ctg253 SOG2201 OVERGO 408 - 440 (bands) hybridisation View Maps
Maize - AGI FPC Oct 2004 - ctg48 SOG2201 OVERGO 50 - 78 (bands) hybridisation View Maps
Maize - AGI FPC Oct 2004 - ctg31 SOG2201 OVERGO 255 - 301 (bands) hybridisation View Maps
Maize - AGI FPC Oct 2004 - ctg78 SOG2201 OVERGO 2,477 - 2,511 (bands) hybridisation View Maps
Maize - AGI FPC Oct 2004 - ctg112 SOG2201 OVERGO 238 - 270 (bands) hybridisation View Maps
Maize - AGI FPC Oct 2004 - ctg296 SOG2201 OVERGO 282 - 284 (bands) hybridisation View Maps
Maize - AGI FPC Oct 2004 - ctg278 SOG2201 OVERGO 23 - 59 (bands) hybridisation View Maps
Maize - AGI FPC Oct 2004 - ctg302 SOG2201 OVERGO 5 - 33 (bands) hybridisation View Maps
Maize - AGI FPC Oct 2004 - ctg117 SOG2201 OVERGO 525 - 570 (bands) hybridisation View Maps
Maize - AGI FPC Oct 2004 - ctg270 SOG2201 OVERGO 834 - 874 (bands) hybridisation View Maps
Maize - AGI FPC Oct 2004 - ctg741 SOG2201 OVERGO 119 - 138 (bands) hybridisation View Maps
Maize - AGI FPC Oct 2004 - ctg409 SOG2201 OVERGO 648 - 683 (bands) hybridisation View Maps
Maize - AGI FPC Oct 2004 - ctg379 SOG2201 OVERGO 62 - 88 (bands) hybridisation View Maps
Maize - AGI FPC Oct 2004 - ctg262 SOG2201 OVERGO 217 - 232 (bands) hybridisation View Maps
ZMMBBb0252K01 Clone 985 - 1,009 Maize - Curated AGI FPC Oct 2004 - ctg117.3 b0252K01 Clone 985 - 1,009 (bands) Marker Identity View Maps