grain_iconCMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Saved Links | Help | Tutorial  
*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Sorghum-Mace 2009
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps 4
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
DArT
RFLP
SSR
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
IAGP
Marker Identity
ISS
Wheat EST Breakpoint Interval
Amplified segment
Maize bin marker
centromeric_marker
Clone end
Collinear block
Constituent clone
contained_in_sequence
EST cluster
hybridisation
maizegdb_to_gramene
Mapped contig to clone
mate_pair
qtl_marker
related_probe
related_sequence
Shared sequence
Shared synonym
Source sequence
Subclone
Synteny
Synteny block
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Sorghum - Mace 2009 [ View Map Set Info ]
Map Name: 4
Map Start: 0 cM
Map Stop: 169.4 cM
Features by Type:
144 DArT
36 RFLP
25 SSR
205 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 205.       of 9 | Next
Sorghum - Mace 2009 - 4
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
txp506 SSR 0 No other positions
txp504 SSR 6.1 No other positions
sPb-9432 DArT 6.1 No other positions
sPb-6465 DArT 6.1 No other positions
sPb-2521 DArT 6.1 - 10.5 No other positions
CDO962 RFLP 6.1 - 10.5 Oat - Cornell Kan/Ogl QTL 1995 - 17 AQDF068 QTL 10.1 - 27.5 (cM) qtl_marker View Maps
Maize - Bins - 3 Bin 3.09 Maize Bin 139.9 - 164.8 (bins) Maize bin marker View Maps
Wheat - Wheat composite QTL 2004 - 7B Xcdo962 RFLP 48 (cM) Marker Identity View Maps
Oat - Cornell Kan/Ogl QTL 1995 - 17 AQDF083 QTL 15 - 27.5 (cM) qtl_marker View Maps
Maize - Maize Bins QTL 2005 - 8 Bin 8.05 Maize Bin 81 - 105.5 (cM) Maize bin marker View Maps
Oat - Cornell Kan/Ogl QTL 1995 - 17 AQDF092 QTL -0.6 - 27.5 (cM) qtl_marker View Maps
Wheat - Synthetic/Opata RI RFLP/SSR QT - 7A Xcdo962-7A RFLP 130.5 (cM) Marker Identity View Maps
Wheat - Wheat composite QTL 2004 - 7A Xcdo962B RFLP 126 (cM) Marker Identity View Maps
Oat - Cornell Kan/Ogl QTL 1995 - 7 AQDF338 QTL 19 - 25.4 (cM) qtl_marker View Maps
Oat - Cornell Kan/Ogl QTL 1995 - 17 AQDF069 QTL -0.6 - 27.5 (cM) qtl_marker View Maps
Oat - Cornell Kan/Ogl QTL 1995 - 17 AQDF100 QTL 10.1 - 27.5 (cM) qtl_marker View Maps
Oat - Cornell Kan/Ogl QTL 1995 - 17 AQDF075 QTL 10.1 - 27.5 (cM) qtl_marker View Maps
Oat - Oat, KxO, 2003 - 7_10_28 cdo962b RFLP 76.3 (cM) Marker Identity View Maps
Oat - Cornell Kan/Ogl QTL 1995 - 7 AQDF357 QTL -0.6 - 25.4 (cM) qtl_marker View Maps
Oat - Cornell Kan/Ogl QTL 1995 - 17 AQDF107 QTL -0.6 - 27.5 (cM) qtl_marker View Maps
Maize - Maize Bins QTL 2005 - 3 Bin 3.09 Maize Bin 139.9 - 164.8 (cM) Maize bin marker View Maps
Oat - Cornell Kan/Ogl QTL 1995 - 7 AQDF344 QTL 13.8 - 25.4 (cM) qtl_marker View Maps
Wheat - Wheat composite QTL 2004 - 7A Xcdo962A RFLP 50 (cM) Marker Identity View Maps
Oryza sativa - Cornell 9024/LH422 RI QTL 1996 - 1 CQAS1 QTL 74.8 - 101.5 (cM) qtl_marker View Maps
Wheat - Composite 2004 - 7B Xcdo962 RFLP 48 (cM) Marker Identity View Maps
Oat - Cornell Kan/Ogl QTL 1995 - 17 AQDF097 QTL -0.6 - 27.5 (cM) qtl_marker View Maps
Oat - Cornell Kan/Ogl QTL 1995 - 7 AQDF336 QTL 19 - 25.4 (cM) qtl_marker View Maps
Maize - IBM2 2008 Neighbors - 3 cdo962b Probed site 726.26 (cM) maizegdb_to_gramene View Maps
Oryza sativa japonica - Gramene Annot Seq 2009 - Chr. 2 CDO962 RFLP 901,057 - 901,792 (bp) Marker Identity View Maps
Oryza sativa x Oryza longistaminata - Cornell RFLP 1994 - 1 CDO962 RFLP 68.8 (cM) Marker Identity View Maps
Oryza sativa - Cornell 9024/LH422 RI QTL 1996 - 1 CDO962 RFLP 103.6 (cM) Marker Identity View Maps
Oat - Cornell Kan/Ogl QTL 1995 - 7 AQDF342 QTL 7.8 - 25.4 (cM) qtl_marker View Maps
Oryza sativa - Cornell 9024/LH422 RI QTL 1996 - 1 CQAS9 QTL 108.2 - 120.7 (cM) qtl_marker View Maps
Oryza sativa japonica - Gramene Annot Seq 2009 - Chr. 1 CQAS13-YLD QTL 11,077,466 - 14,626,881 (bp) qtl_marker View Maps
Oat - Cornell Kan/Ogl QTL 1995 - 17 AQDF108 QTL -0.6 - 27.5 (cM) qtl_marker View Maps
Oat - Cornell Kan/Ogl QTL 1995 - 17 AQDF105 QTL -0.6 - 27.5 (cM) qtl_marker View Maps
Oat - Cornell Kan/Ogl QTL 1995 - 7 AQDF345 QTL 13.8 - 29.4 (cM) qtl_marker View Maps
Oat - Cornell Kan/Ogl QTL 1995 - 17 AQDF088 QTL -0.6 - 27.5 (cM) qtl_marker View Maps
Oat - Cornell Kan/Ogl QTL 1995 - 7 AQDF353 QTL 19 - 22.3 (cM) qtl_marker View Maps
Oat - Cornell Kan/Ogl QTL 1995 - 7 Xcdo962B RFLP 14.4 (cM) Marker Identity View Maps
Oat - Cornell Kan/Ogl QTL 1995 - 7 AQDF351 QTL 13.8 - 29.4 (cM) qtl_marker View Maps
Oat - Cornell Kan/Ogl QTL 1995 - 17 AQDF096 QTL -0.6 - 27.5 (cM) qtl_marker View Maps
Oat - Cornell Kan/Ogl QTL 1995 - 7 AQDF356 QTL -0.6 - 29.4 (cM) qtl_marker View Maps
Maize - Bins - 8 Bin 8.05 Maize Bin 81 - 105.5 (bins) Maize bin marker View Maps
Oryza sativa japonica - Gramene Annot Seq 2009 - Chr. 1 CQAS9-SDSPCENT QTL 11,077,466 - 11,077,990 (bp) qtl_marker View Maps
Oat - Cornell Kan/Ogl QTL 1995 - 17 AQDF094 QTL 13.3 - 27.5 (cM) qtl_marker View Maps
Oat - Cornell Kan/Ogl QTL 1995 - 7 AQDF339 QTL 19 - 25.4 (cM) qtl_marker View Maps
Sorghum - Klein 2004 - LG-04 CDO962 RFLP 5 - 9.7 (cM) Marker Identity View Maps
Oat - Cornell Kan/Ogl QTL 1995 - 17 Xcdo962A RFLP 16.5 (cM) Marker Identity View Maps
Maize - BNL 1996 - 3 cdo962b RFLP 170 (cM) Marker Identity View Maps
Oat - Cornell Kan/Ogl QTL 1995 - 17 AQDF099 QTL -0.6 - 27.5 (cM) qtl_marker View Maps
Wheat - Composite 2004 - 7A Xcdo962A RFLP 50 (cM) Marker Identity View Maps
Oryza sativa x Oryza longistaminata - Cornell RFLP 2001 - 1 CDO962 RFLP 53.95 (cM) Marker Identity View Maps
Oat - Cornell Kan/Ogl QTL 1995 - 17 AQDF078 QTL 19.6 - 27.5 (cM) qtl_marker View Maps
Oat - Cornell Kan/Ogl QTL 1995 - 7 AQDF354 QTL 18.6 - 25.4 (cM) qtl_marker View Maps
Oryza sativa - Cornell 9024/LH422 RI QTL 1996 - 1 CQAS13 QTL 90.8 - 120.7 (cM) qtl_marker View Maps
Oat - Cornell Kan/Ogl QTL 1995 - 7 AQDF341 QTL 13.8 - 25.4 (cM) qtl_marker View Maps
Maize - IBM2 2008 Neighbors - 8 cdo962a Probed site 374.17 (cM) maizegdb_to_gramene View Maps
Oat - Cornell Kan/Ogl QTL 1995 - 17 AQDF065 QTL -0.6 - 27.5 (cM) qtl_marker View Maps
Oat - Cornell Kan/Ogl QTL 1995 - 17 AQDF071 QTL -0.6 - 27.5 (cM) qtl_marker View Maps
Oryza sativa japonica - Gramene Annot Seq 2009 - Chr. 1 CQAS1-PTHT QTL 23,117,968 - 27,050,367 (bp) qtl_marker View Maps
Oat - Cornell Kan/Ogl QTL 1995 - 7 AQDF340 QTL 19 - 22.3 (cM) qtl_marker View Maps
Oat - Cornell Kan/Ogl QTL 1995 - 17 AQDF076 QTL 10.1 - 27.5 (cM) qtl_marker View Maps
Oat - Cornell Kan/Ogl QTL 1995 - 7 AQDF352 QTL 19 - 25.4 (cM) qtl_marker View Maps
Oat - Oat, KxO, 2003 - 17 CDO962a RFLP 5.28 (cM) Marker Identity View Maps
Oat - Cornell Kan/Ogl QTL 1995 - 7 AQDF337 QTL 7.8 - 29.4 (cM) qtl_marker View Maps
Oat - Cornell Kan/Ogl QTL 1995 - 7 AQDF355 QTL -0.6 - 21.6 (cM) qtl_marker View Maps
Oat - Cornell Kan/Ogl QTL 1995 - 17 AQDF095 QTL -0.6 - 27.5 (cM) qtl_marker View Maps
Oat - Cornell Kan/Ogl QTL 1995 - 17 AQDF084 QTL -0.6 - 27.5 (cM) qtl_marker View Maps
Wheat - Composite 2004 - 7A Xcdo962B RFLP 126 (cM) Marker Identity View Maps
Oat - Cornell Kan/Ogl QTL 1995 - 17 AQDF077 QTL -0.6 - 27.5 (cM) qtl_marker View Maps
Oat - Cornell Kan/Ogl QTL 1995 - 17 AQDF086 QTL -0.6 - 27.5 (cM) qtl_marker View Maps
Oat - Cornell Kan/Ogl QTL 1995 - 7 AQDF349 QTL -0.6 - 25.4 (cM) qtl_marker View Maps
Oat - Cornell Kan/Ogl QTL 1995 - 17 AQDF106 QTL -0.6 - 27.5 (cM) qtl_marker View Maps
Oat - Cornell Diploid 1995 - D CDO962 RFLP 35.7 (cM) Marker Identity View Maps
Wheat - Cornell Synthetic/Opata 1995 - 7A Xcdo962-7A RFLP 130.5 (cM) Marker Identity View Maps
Oat - Cornell Kan/Ogl QTL 1995 - 7 AQDF347 QTL 7.8 - 29.4 (cM) qtl_marker View Maps
Oat - Cornell Kan/Ogl QTL 1995 - 17 AQDF073 QTL -0.6 - 27.5 (cM) qtl_marker View Maps
ISU47 RFLP 6.1 - 10.5 Sorghum - Klein 2004 - LG-04 ISU47 RFLP 5 - 9.7 (cM) Marker Identity View Maps
Maize - Bins - 4 Bin 4.11 Maize Bin 169.7 - 175.8 (bins) Maize bin marker View Maps
Maize - IBM2 2008 Neighbors - 4 isu47a Probed site 759.81 (cM) maizegdb_to_gramene View Maps
Maize - Maize Bins QTL 2005 - 4 Bin 4.11 Maize Bin 169.7 - 175.8 (cM) Maize bin marker View Maps
Oryza sativa x Oryza longistaminata - Cornell RFLP 2001 - 11 ISU47 RFLP -1.5 (cM) Marker Identity View Maps
Maize - Cornell Wilson 1999 - 4 ISU47 RFLP 195.7 (cM) Marker Identity View Maps
txs754 RFLP 10.5 Sorghum - Klein 2004 - LG-04 txs754 RFLP 9.7 (cM) Marker Identity View Maps
sPb-4074 DArT 11.6 No other positions
sPb-6640 DArT 11.7 No other positions
sPb-7493 DArT 10.5 - 16.8 No other positions
sPb-8446 DArT 10.5 - 16.8 No other positions
sPb-2739 DArT 10.5 - 16.8 No other positions
msbcir340 SSR 15.3 No other positions
sPb-4718 DArT 16.8 No other positions
umc111 RFLP 16.8 Sorghum - Klein 2004 - LG-04 umc111 RFLP 15.5 - 17.5 (cM) Marker Identity View Maps
Maize - IBM2 2008 Neighbors - 4 umc111a(psy) Probed site 728.5 (cM) maizegdb_to_gramene View Maps
Maize - Maize Bins QTL 2005 - 7 Bin 7.03 Maize Bin 66.1 - 91.5 (cM) Maize bin marker View Maps
Maize - BNL 1996 - 4 umc111a(psy) RFLP 190.9 (cM) Marker Identity View Maps
Sorghum - UGA BTx623/IS3620C RL SSR RFLP - 4 Xumc111 RFLP 11.2 (cM) Marker Identity View Maps
Maize - Bins - 4 Bin 4.10 Maize Bin 153.7 - 169.7 (bins) Maize bin marker View Maps
Maize - Bins - 7 Bin 7.03 Maize Bin 66.1 - 91.5 (bins) Maize bin marker View Maps
Maize - UMC 1998 - 4 umc111a(psy) RFLP 169.7 (cM) Marker Identity View Maps
Maize - Iowa Mo17/H99 RI QTL 1996 - 4 umc111 RFLP 200 (cM) Marker Identity View Maps
Maize - CIMMYT Ac7729/Ac7643S QTL 1996 - 9 umc111c RFLP 11 (cM) Marker Identity View Maps
Maize - IBM 2002 - 7 umc111b(psy) RFLP 332.9 (cM) Marker Identity View Maps
sPb-1584 DArT 18.2 No other positions
sPb-4233 DArT 16.8 - 25.8 No other positions
ST1163-1 RFLP 16.8 - 25.8 No other positions
cup05 SSR 21.3 - 28.8 No other positions
sPb-7042 DArT 21.3 - 28.8 No other positions
sPb-5826 DArT 21.3 - 28.8 No other positions
SG30 RFLP 27.6 No other positions
gpsb050 SSR 28.8 No other positions
GE8 RFLP 31.7 No other positions