grain_iconCMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Saved Links | Help | Tutorial  
*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Sorghum-Klein 2004
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps LG-09
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
AFLP
RFLP
SSR
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
IAGP
Marker Identity
ISS
Wheat EST Breakpoint Interval
Amplified segment
Maize bin marker
centromeric_marker
Clone end
Collinear block
Constituent clone
contained_in_sequence
EST cluster
hybridisation
maizegdb_to_gramene
Mapped contig to clone
mate_pair
qtl_marker
related_probe
related_sequence
Shared sequence
Shared synonym
Source sequence
Subclone
Synteny
Synteny block
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Sorghum - Klein 2004 [ View Map Set Info ]
Map Name: LG-09
Map Start: 0 cM
Map Stop: 153 cM
Features by Type:
148 AFLP
22 RFLP
7 SSR
177 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 177.       of 8 | Next
Sorghum - Klein 2004 - LG-09
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
txs2148 RFLP 0 Sorghum - UGA BTx623/IS3620C RL SSR RFLP - 9 AQGN058 QTL 1.6 - 18.6 (cM) qtl_marker View Maps
Sorghum - UGA BTx623/IS3620C RL SSR RFLP - 9 AQGN059 QTL 0.7 - 13.6 (cM) qtl_marker View Maps
Sorghum - UGA BTx623/IS3620C RL SSR RFLP - 9 Xtxs2148 RFLP 1.4 (cM) Marker Identity View Maps
txa2315 AFLP 6.6 - 23.5 No other positions
txs1150 RFLP 24.1 Sorghum - Mace 2009 - 9 txs1150 RFLP 65.2 - 70.1 (cM) Marker Identity View Maps
txa2757 AFLP 24.1 - 30.2 No other positions
txa6354 AFLP 30.2 - 36.6 Sorghum - TAMU FPC 2004 - ctg1051 txa6354 AFLP 35 - 74 (bands) Marker Identity View Maps
txa6344 AFLP 43.6 - 45.5 Sorghum - TAMU FPC 2004 - ctg3776 txa6344 AFLP 39 - 93 (bands) Marker Identity View Maps
txa3526 AFLP 47.8 No other positions
txa2542 AFLP 54.4 Sorghum - TAMU FPC 2004 - ctg1259 txa2542 AFLP 5 - 55 (bands) Marker Identity View Maps
txa567 AFLP 54.4 Sorghum - TAMU FPC 2004 - ctg1259 txa567(09) AFLP 5 - 55 (bands) Marker Identity View Maps
txa4113 AFLP 85 No other positions
txa236 AFLP 87.7 - 91.7 No other positions
txa4122 AFLP 118.4 No other positions
txa6028 AFLP 118.4 - 129.2 No other positions
txs1102 RFLP 129.2 - 143.1 Sorghum - Mace 2009 - 9 txs1102 RFLP 153.2 - 167.6 (cM) Marker Identity View Maps
txa562 AFLP 129.2 - 143.1 No other positions
CDO393 RFLP 143.1 Wheat - Composite 2004 - 1D Xcdo393A RFLP 113 (cM) Marker Identity View Maps
Sorghum - Mace 2009 - 9 CDO393 RFLP 167.6 - 175.6 (cM) Marker Identity View Maps
Oryza sativa x Oryza longistaminata - Cornell RFLP 2001 - 5 CDO393 RFLP 120.1 (cM) Marker Identity View Maps
Wheat - Composite 2004 - 1A Xcdo393 RFLP 132 (cM) Marker Identity View Maps
Wheat - Wheat composite QTL 2004 - 1D Xcdo393A RFLP 113 (cM) Marker Identity View Maps
Oat - Cornell Kan/Ogl QTL 1995 - 1 AQDF002 QTL 12.1 - 21.9 (cM) qtl_marker View Maps
Barley - Barley consensus - 1995 - 1H CDO393 RFLP 97.1 (cM) Marker Identity View Maps
Oat - Oat, KxO, 2003 - 5 cdo393b RFLP 59 (cM) Marker Identity View Maps
Wheat - Wheat composite QTL 2004 - 1A Xcdo393 RFLP 72 (cM) Marker Identity View Maps
Wheat - Wheat composite QTL 2004 - 1A Xcdo393 RFLP 132 (cM) Marker Identity View Maps
Maize - Bins - 6 Bin 6.08 Maize Bin 156.9 - 159.8 (bins) Maize bin marker View Maps
Barley - Barley consensus 2003 - 1H CDO393 RFLP 118.7 (cM) Marker Identity View Maps
Maize - Cornell Wilson 1999 - 6 CDO393 RFLP 172.7 (cM) Marker Identity View Maps
Maize - IBM2 2008 Neighbors - 6 cdo393 Probed site 539.83 (cM) maizegdb_to_gramene View Maps
Sorghum - UGA BTx623/IS3620C RL SSR RFLP - 9 AQGN056 QTL 125.3 - 142.7 (cM) qtl_marker View Maps
Wheat - Cornell Synthetic/Opata 1995 - 1A Xcdo393-1A RFLP 160.7 (cM) Marker Identity View Maps
Sorghum - UGA BTx623/IS3620C RL SSR RFLP - 9 CDO393 RFLP 133.3 (cM) Marker Identity View Maps
Oat - Oat, KxO, 2003 - 3+38 cdo393a RFLP 72.9 (cM) Marker Identity View Maps
Oat - Oat, KxO, 2003 - 1 cdo393c RFLP 0 (cM) Marker Identity View Maps
Oat - Cornell Kan/Ogl QTL 1995 - 1 Xcdo393D RFLP 0 (cM) Marker Identity View Maps
Wheat - Composite 2004 - 1B Xcdo393 RFLP 72 (cM) Marker Identity View Maps
Sorghum - UGA BTx623/IS3620C RL SSR RFLP - 9 AQGN057 QTL 123.3 - 142.7 (cM) qtl_marker View Maps
Sorghum - UGA BTx623/IS3620C RL SSR RFLP - 9 AQHL040 QTL 133.3 - 143.7 (cM) qtl_marker View Maps
Wheat - Synthetic/Opata RI RFLP/SSR QT - 1A Xcdo393-1A RFLP 160.7 (cM) Marker Identity View Maps
Maize - Maize Bins QTL 2005 - 6 Bin 6.08 Maize Bin 156.9 - 159.8 (cM) Maize bin marker View Maps
Oryza sativa x Oryza longistaminata - Cornell RFLP 1994 - 5 CDO393 RFLP 132.3 (cM) Marker Identity View Maps
Oat - Cornell Diploid 1995 - A CDO393 RFLP 86.8 (cM) Marker Identity View Maps
txa2673 AFLP 143.1 - 153 No other positions
ISU140 RFLP 153 Maize - Cornell Wilson 1999 - 5 ISU140C RFLP 93.5 (cM) Marker Identity View Maps
Maize - Maize Bins QTL 2005 - 5 Bin 5.03 Maize Bin 55 - 86.7 (cM) Maize bin marker View Maps
Maize - IBM2 2008 Neighbors - 6 isu140a Probed site 545.37 (cM) maizegdb_to_gramene View Maps
Maize - Bins - 6 Bin 6.06 Maize Bin 113.3 - 129.9 (bins) Maize bin marker View Maps
Sorghum - Mace 2009 - 9 ISU140 RFLP 175.6 (cM) Marker Identity View Maps
Maize - Cornell Wilson 1999 - 6 ISU140A RFLP 174.9 (cM) Marker Identity View Maps
Sorghum - UGA BTx623/IS3620C RL SSR RFLP - 9 ISU140 RFLP 143.7 (cM) Marker Identity View Maps
Maize - IBM2 2008 Neighbors - 5 isu140c Probed site 223.8 (cM) maizegdb_to_gramene View Maps
Maize - IBM2 2008 Neighbors - 8 isu140b Probed site 242.85 (cM) maizegdb_to_gramene View Maps
Maize - Maize Bins QTL 2005 - 6 Bin 6.06 Maize Bin 113.3 - 129.9 (cM) Maize bin marker View Maps
Maize - Maize Bins QTL 2005 - 8 Bin 8.03 Maize Bin 49.3 - 62.9 (cM) Maize bin marker View Maps
Sorghum - UGA BTx623/IS3620C RL SSR RFLP - 9 AQGN056 QTL 125.3 - 142.7 (cM) qtl_marker View Maps
Oryza sativa x Oryza longistaminata - Cornell RFLP 2001 - 5 ISU140 RFLP 114.15 (cM) Marker Identity View Maps
Maize - Cornell Wilson 1999 - 8 ISU140B RFLP 79.1 (cM) Marker Identity View Maps
Sorghum - UGA BTx623/IS3620C RL SSR RFLP - 9 AQGN057 QTL 123.3 - 142.7 (cM) qtl_marker View Maps
Sorghum - UGA BTx623/IS3620C RL SSR RFLP - 9 AQHL040 QTL 133.3 - 143.7 (cM) qtl_marker View Maps
Maize - Bins - 5 Bin 5.03 Maize Bin 55 - 86.7 (bins) Maize bin marker View Maps
Maize - Bins - 8 Bin 8.03 Maize Bin 49.3 - 62.9 (bins) Maize bin marker View Maps
txa2807 AFLP 143.1 - 153 No other positions
txa175 AFLP 76.3 - 77.5 Sorghum - TAMU FPC 2004 - ctg776 txa175 AFLP 26 - 83 (bands) Marker Identity View Maps
txa184 AFLP 74.5 - 75.9 Sorghum - TAMU FPC 2004 - ctg221 txa184 AFLP 21 - 71 (bands) Marker Identity View Maps
txa2011 AFLP 65.1 Sorghum - TAMU FPC 2004 - ctg2075 txa2011 AFLP 15 - 36 (bands) Marker Identity View Maps
txa2014 AFLP 74.5 - 75.9 No other positions
txa2063 AFLP 75.9 Sorghum - TAMU FPC 2004 - ctg2607 txa2063 AFLP 1 - 21 (bands) Marker Identity View Maps
Sorghum - TAMU FPC 2004 - ctg269 txa2063 AFLP 12 - 48 (bands) Marker Identity View Maps
txa2098 AFLP 71.4 Sorghum - TAMU FPC 2004 - ctg813 txa2098 AFLP 9 - 44 (bands) Marker Identity View Maps