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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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Map Set Oryza sativa-Gramene IRGSP Assm 2005
(Reference Set)
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Correspondences
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Maps Chr. 9
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Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Clone
FPC
Genomic DNA
mRNA
RFLP
Other
 
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Features:		 No Yes
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 Correspondence Options
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Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
IAGP
Marker Identity
ISS
Wheat EST Breakpoint Interval
Amplified segment
Maize bin marker
centromeric_marker
Clone end
Collinear block
Constituent clone
contained_in_sequence
EST cluster
hybridisation
maizegdb_to_gramene
Mapped contig to clone
mate_pair
qtl_marker
related_probe
related_sequence
Shared sequence
Shared synonym
Source sequence
Subclone
Synteny
Synteny block
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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Size of Dot Plot Pixels: 1
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Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
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Sanity Check:		 No Yes
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Map Details

Map Type: Sequence [ View Map Type Info ]
Map Set Name: Oryza sativa - Gramene IRGSP Assm 2005 [ View Map Set Info ]
Map Name: Chr. 9
Map Start: 0 bp
Map Stop: 23,769,628 bp
Features by Type:
6,142 Clone
289 FPC
23 Genomic DNA
301 mRNA
249 RFLP
7,004 Total

Map Features

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Items 1 to 25 of 7,004.       of 281 | Next
Oryza sativa - Gramene IRGSP Assm 2005 - Chr. 9
(Click headers to resort)		 Comparative Maps
Feature Type Position (bp) Map Feature Type Position Evidence Actions
AB030211 mRNA 23,013,229 - 23,013,498 No other positions
AB030211 mRNA 23,014,375 - 23,014,829 No other positions
AB032061 mRNA 22,003,339 - 22,003,553 No other positions
AB032061 mRNA 22,003,634 - 22,004,048 No other positions
AB032061 mRNA 22,005,215 - 22,005,579 No other positions
AB026568 mRNA 20,720,601 - 20,720,932 No other positions
AB026568 mRNA 20,721,030 - 20,721,215 No other positions
AB026568 mRNA 20,721,304 - 20,721,475 No other positions
AB026568 mRNA 20,721,562 - 20,721,691 No other positions
AB026568 mRNA 20,721,768 - 20,721,844 No other positions
AB026568 mRNA 20,722,817 - 20,722,902 No other positions
AB026568 mRNA 20,723,011 - 20,723,120 No other positions
AB045121 mRNA 13,242,510 - 13,243,938 No other positions
AF189365 mRNA 20,221,029 - 20,221,126 No other positions
AF189365 mRNA 20,221,778 - 20,221,870 No other positions
AF189365 mRNA 20,221,987 - 20,222,028 No other positions
AF189365 mRNA 20,222,172 - 20,222,536 No other positions
AF189365 mRNA 20,220,858 - 20,220,964 No other positions
L29471 mRNA 23,641,565 - 23,641,602 No other positions
L29471 mRNA 23,641,927 - 23,642,478 No other positions
AF189365 mRNA 20,219,940 - 20,220,096 No other positions
AF189365 mRNA 20,220,614 - 20,220,618 No other positions
AF189365 mRNA 20,220,713 - 20,220,775 No other positions
AB029060 mRNA 23,535,013 - 23,535,223 No other positions
AB029060 mRNA 23,536,491 - 23,536,529 No other positions