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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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Map Set Oryza sativa-Gramene IRGSP Assm 2005
(Reference Set)
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Correspondences
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Maps Chr. 4
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Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Clone
FPC
Genomic DNA
mRNA
RFLP
Other
 
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Features:		 No Yes
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 Correspondence Options
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Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
IAGP
Marker Identity
ISS
Wheat EST Breakpoint Interval
Amplified segment
Maize bin marker
centromeric_marker
Clone end
Collinear block
Constituent clone
contained_in_sequence
EST cluster
hybridisation
maizegdb_to_gramene
Mapped contig to clone
mate_pair
qtl_marker
related_probe
related_sequence
Shared sequence
Shared synonym
Source sequence
Subclone
Synteny
Synteny block
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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Size of Dot Plot Pixels: 1
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Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
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Sanity Check:		 No Yes
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Map Details

Map Type: Sequence [ View Map Type Info ]
Map Set Name: Oryza sativa - Gramene IRGSP Assm 2005 [ View Map Set Info ]
Map Name: Chr. 4
Map Start: 0 bp
Map Stop: 35,858,747 bp
Features by Type:
11,115 Clone
525 FPC
42 Genomic DNA
707 mRNA
410 RFLP
12,799 Total

Map Features

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Items 1 to 25 of 12,799.       of 512 | Next
Oryza sativa - Gramene IRGSP Assm 2005 - Chr. 4
(Click headers to resort)		 Comparative Maps
Feature Type Position (bp) Map Feature Type Position Evidence Actions
D38753 mRNA 18,581,156 - 18,582,139 No other positions
D38753 mRNA 18,582,549 - 18,583,050 No other positions
D38753 mRNA 18,585,152 - 18,585,332 No other positions
AF261273 mRNA 28,054,174 - 28,054,399 No other positions
AF261273 mRNA 28,054,500 - 28,054,612 No other positions
AF261273 mRNA 28,054,689 - 28,054,882 No other positions
AF261273 mRNA 28,054,982 - 28,055,585 No other positions
AB042115 mRNA 31,465,813 - 31,465,964 No other positions
AB042115 mRNA 31,466,925 - 31,467,008 No other positions
AB042115 mRNA 31,467,113 - 31,467,396 No other positions
AF257779 mRNA 25,273,817 - 25,273,999 No other positions
AF257779 mRNA 25,274,099 - 25,274,483 No other positions
AB042115 mRNA 31,465,099 - 31,465,234 No other positions
AB042115 mRNA 31,462,639 - 31,462,944 No other positions
AB042115 mRNA 31,464,586 - 31,464,665 No other positions
AB042115 mRNA 31,464,816 - 31,464,971 No other positions
AF247165 mRNA 29,883,768 - 29,883,920 No other positions
AF247165 mRNA 29,884,195 - 29,884,510 No other positions
AF247165 mRNA 29,886,491 - 29,887,109 No other positions
AB024987 mRNA 28,619,520 - 28,619,574 No other positions
AB024987 mRNA 28,619,711 - 28,619,801 No other positions
AB024987 mRNA 28,619,894 - 28,620,030 No other positions
AB007452 mRNA 30,685,920 - 30,686,143 No other positions
AB007452 mRNA 30,686,246 - 30,686,734 No other positions
AB007452 mRNA 30,687,667 - 30,687,795 No other positions