grain_iconCMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Saved Links | Help | Tutorial  
*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Oryza sativa-Gramene IRGSP Assm 2005
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Chr. 1
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Clone
EST
FPC
Genomic DNA
mRNA
RFLP
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
IAGP
Marker Identity
ISS
Wheat EST Breakpoint Interval
Amplified segment
Maize bin marker
centromeric_marker
Clone end
Collinear block
Constituent clone
contained_in_sequence
EST cluster
hybridisation
maizegdb_to_gramene
Mapped contig to clone
mate_pair
qtl_marker
related_probe
related_sequence
Shared sequence
Shared synonym
Source sequence
Subclone
Synteny
Synteny block
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: Sequence [ View Map Type Info ]
Map Set Name: Oryza sativa - Gramene IRGSP Assm 2005 [ View Map Set Info ]
Map Name: Chr. 1
Map Start: 0 bp
Map Stop: 45,049,398 bp
Features by Type:
16,114 Clone
3 EST
801 FPC
127 Genomic DNA
1,060 mRNA
699 RFLP
18,804 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 18,804.       of 753 | Next
Oryza sativa - Gramene IRGSP Assm 2005 - Chr. 1
(Click headers to resort)		 Comparative Maps
Feature Type Position (bp) Map Feature Type Position Evidence Actions
AF200467 mRNA 35,423,875 - 35,423,968 No other positions
AF200467 mRNA 35,424,059 - 35,424,150 No other positions
AF200467 mRNA 35,424,317 - 35,424,414 No other positions
AF200467 mRNA 35,424,647 - 35,424,802 No other positions
AF200467 mRNA 35,425,895 - 35,426,514 No other positions
AF200467 mRNA 35,426,608 - 35,426,678 No other positions
AF200467 mRNA 35,426,764 - 35,427,015 No other positions
AF200467 mRNA 35,427,082 - 35,427,199 No other positions
AF200467 mRNA 35,427,303 - 35,427,474 No other positions
AF200467 mRNA 35,427,558 - 35,428,385 No other positions
D38011 mRNA 36,909,573 - 36,909,628 No other positions
D38011 mRNA 36,909,718 - 36,909,808 No other positions
D38011 mRNA 36,909,910 - 36,909,994 No other positions
D38011 mRNA 36,910,176 - 36,910,306 No other positions
D38011 mRNA 36,911,292 - 36,911,481 No other positions
AB037418 mRNA 43,690,763 - 43,691,084 No other positions
AB037418 mRNA 43,687,672 - 43,687,792 No other positions
AB037418 mRNA 43,687,948 - 43,688,397 No other positions
AB037418 mRNA 43,689,189 - 43,689,272 No other positions
AB037418 mRNA 43,689,819 - 43,689,901 No other positions
AB037418 mRNA 43,689,989 - 43,690,076 No other positions
AB037418 mRNA 43,690,224 - 43,690,478 No other positions
AB037183 mRNA 35,522,840 - 35,523,929 No other positions
L37526 mRNA 40,077,189 - 40,077,677 No other positions
L37526 mRNA 40,078,384 - 40,078,428 No other positions