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Map Set Oryza sativa japonica-Gramene Annot Seq 2009
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EST
EST Cluster
Gene
Gene Prediction
Genomic DNA
GSS
mRNA
OVERGO
QTL
RFLP
SSR
STS
Synteny block
Other
 
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IAGP
Marker Identity
ISS
Wheat EST Breakpoint Interval
Amplified segment
Maize bin marker
centromeric_marker
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Constituent clone
contained_in_sequence
EST cluster
hybridisation
maizegdb_to_gramene
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mate_pair
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Map Details

Map Type: Sequence [ View Map Type Info ]
Map Set Name: Oryza sativa japonica - Gramene Annotated Nipponbare Sequence 2009 [ View Map Set Info ]
Map Name: Chr. 6
Map Start: 1 bp
Map Stop: 31,216,491 bp
Features by Type:
191 EST
1,799 EST Cluster
39 Gene
10 Gene Prediction
74 Genomic DNA
33 GSS
628 mRNA
28 OVERGO
777 QTL
642 RFLP
1,629 SSR
10 STS
61 Synteny block
5,921 Total

Map Features

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Items 1 to 25 of 5,921.       of 237 | Next
Oryza sativa japonica - Gramene Annotated Nipponbare Sequence 2009 - Chr. 6
(Click headers to resort)		 Comparative Maps
Feature Type Position (bp) Map Feature Type Position Evidence Actions
RM5855 SSR 7,410,636 - 7,411,193 No other positions
RM19690 SSR 7,463,036 - 7,463,325 No other positions
RM19691 SSR 7,464,972 - 7,465,176 No other positions
RM3438 SSR 7,465,773 - 7,465,957 No other positions
RM19695 SSR 7,501,700 - 7,501,816 No other positions
RM19696 SSR 7,504,223 - 7,504,758 No other positions
RM20160 SSR 19,706,625 - 19,706,865 No other positions
RM7179 SSR 19,728,535 - 19,728,905 Oryza sativa - IRMI 2003 - 6 RM7179 SSR 68.5 (cM) Marker Identity View Maps
RM20162 SSR 19,744,360 - 19,744,570 No other positions
RM20163 SSR 19,748,601 - 19,748,784 No other positions
RM19367 SSR 2,335,233 - 2,335,345 No other positions
RM19371 SSR 2,365,116 - 2,365,629 No other positions
RM19377 SSR 2,440,455 - 2,440,646 No other positions
RM20049 SSR 16,100,686 - 16,100,837 No other positions
RM20051 SSR 16,109,713 - 16,110,362 No other positions
RM20052 SSR 16,119,351 - 16,119,480 No other positions
RM20053 SSR 16,133,559 - 16,133,950 No other positions
RM19795 SSR 9,565,009 - 9,565,201 No other positions
RM19799 SSR 9,676,516 - 9,676,865 No other positions
RM19800 SSR 9,677,630 - 9,677,922 No other positions
RM20353 SSR 24,027,988 - 24,028,250 No other positions
RM20354 SSR 24,032,481 - 24,032,602 Oryza sativa - CIAT SSR 2006 - 6 RM20354 SSR 119.2 (cM) Marker Identity View Maps
RM162 SSR 24,035,491 - 24,035,615 Oryza sativa - LSU Caiapo/IRGC103544 QTL 2004 - 6 AQFU022 QTL 0 - 116 (cM) qtl_marker View Maps
Oryza sativa - Cornell IR64/Azu DH QTL 2001 - 6 AQB015 QTL 106.8 - 118.9 (cM) qtl_marker View Maps
Oryza sativa - LSU Caiapo/IRGC103544 QTL 2004 - 6 AQFU025 QTL 204 - 209 (cM) qtl_marker View Maps
Oryza sativa - CNHZAU Zhe97/Wuy2 QTL 2004 - 6 AQEI061 QTL 95 - 112.1 (cM) qtl_marker View Maps
Oryza sativa - M202/IR50 UCD QTL 2003 - 6 AQDU002 QTL 49.2 - 50.1 (cM) qtl_marker View Maps
Oryza sativa - CNHZAU Zhe97/Wuy2 QTL 2004 - 6 AQEI112 QTL 63.4 - 75.7 (cM) qtl_marker View Maps
Oryza sativa - CNHZAU Zhe97/Wuy2 QTL 2004 - 6 AQEI023 QTL 95 - 112.1 (cM) qtl_marker View Maps
Oryza sativa - CNHZAU Zhe97/Wuy2 QTL 2004 - 6 AQFJ030 QTL 95 - 112.1 (cM) qtl_marker View Maps
Oryza sativa - Cornell Jef/Oruf BC QTL 2003 - 6 RM162 SSR 64.6 (cM) Marker Identity View Maps
Oryza sativa - CNHZAU Zhe97/Wuy2 QTL 2004 - 6 AQFJ012 QTL 95 - 112.1 (cM) qtl_marker View Maps
Oryza sativa - CNHZAU Zhe97/Wuy2 QTL 2004 - 6 AQFJ072 QTL 75.7 - 92.8 (cM) qtl_marker View Maps
Oryza sativa - Cornell Jef/Oruf BC QTL 2003 - 6 AQFE064 QTL 33.2 - 50.1 (cM) qtl_marker View Maps
Oryza sativa - Cornell IR64/Azu DH QTL 2001 - 6 CQAE11 QTL 74.9 - 125.4 (cM) qtl_marker View Maps
Oryza sativa - LSU Caiapo/IRGC103544 QTL 2004 - 6 AQFU006 QTL 0 - 116 (cM) qtl_marker View Maps
Oryza sativa - Cornell IR64/Azu DH QTL 2001 - 6 RM162 SSR 108.3 (cM) Marker Identity View Maps
Oryza sativa - LSU Caiapo/IRGC103544 QTL 2004 - 6 AQFU019 QTL 116 - 204 (cM) qtl_marker View Maps
Oryza sativa - CNHZAU Zhe97/Wuy2 QTL 2004 - 6 AQEI124 QTL 95 - 112.1 (cM) qtl_marker View Maps
Oryza sativa - M202/IR50 UCD QTL 2003 - 6 CQAA2 QTL 49.2 - 50.1 (cM) qtl_marker View Maps
Oryza sativa - CNHZAU Zhe97/Wuy2 QTL 2004 - 6 AQEI066 QTL 75.7 - 92.8 (cM) qtl_marker View Maps
Oryza sativa - Cornell SSR 2001 - 6 RM162 SSR 108.3 (cM) Marker Identity View Maps
Oryza sativa - LSU Caiapo/IRGC103544 QTL 2004 - 6 RM162 SSR 204 (cM) Marker Identity View Maps
Oryza sativa - CNHZAU Zhe97/Wuy2 QTL 2004 - 6 AQEI145 QTL 95 - 112.1 (cM) qtl_marker View Maps
Oryza sativa - Cornell Jef/Oruf BC QTL 2003 - 6 AQFE099 QTL 64.6 - 87.5 (cM) qtl_marker View Maps
Oryza sativa - CNHZAU Zhe97/Wuy2 QTL 2004 - 6 AQEI142 QTL 63.4 - 75.7 (cM) qtl_marker View Maps
Oryza sativa - CNHZAU Zhe97/Wuy2 QTL 2004 - 6 RM162 SSR 92.8 (cM) Marker Identity View Maps
Oryza sativa - CNYU Bal/Nan//Bal BC1 QTL 2001 - 6a RM162 SSR 0 (cM) Marker Identity View Maps
Oryza sativa - LSU Caiapo/IRGC103544 QTL 2004 - 6 AQFU033 QTL 116 (cM) qtl_marker View Maps
Oryza sativa - Cornell Jef/Oruf BC QTL 2003 - 6 AQFE098 QTL 64.6 - 87.5 (cM) qtl_marker View Maps
Oryza sativa - LSU Caiapo/IRGC103544 QTL 2004 - 6 AQFU018 QTL 0 - 116 (cM) qtl_marker View Maps
Oryza sativa - LSU Caiapo/IRGC103544 QTL 2004 - 6 AQFU031 QTL 116 (cM) qtl_marker View Maps
Oryza sativa - JUT IR36/Genj QTL 2004 - 6 RM162 SSR 68.8 (cM) Marker Identity View Maps
Oryza sativa - CNHZAU Zhe97/Wuy2 QTL 2004 - 6 AQFJ002 QTL 95 - 112.1 (cM) qtl_marker View Maps
Oryza sativa - CNHZAU Zhe97/Wuy2 QTL 2004 - 6 AQEI139 QTL 63.4 - 75.7 (cM) qtl_marker View Maps
Oryza sativa - CNHZAU Zhe97/Wuy2 QTL 2004 - 6 AQFJ044 QTL 95 - 112.1 (cM) qtl_marker View Maps
Oryza sativa - LSU Caiapo/IRGC103544 QTL 2004 - 6 AQFU016 QTL 0 - 116 (cM) qtl_marker View Maps
Oryza sativa - LSU Caiapo/IRGC103544 QTL 2004 - 6 AQFU027 QTL 116 - 204 (cM) qtl_marker View Maps
Oryza sativa - CIAT SSR 2006 - 6 RM162 SSR 114.9 (cM) Marker Identity View Maps
Oryza sativa - CNNAU IR50/Tat/Miy QTL 2006 - 6 RM162 SSR 90.1 (cM) Marker Identity View Maps
Oryza sativa - CNHZAU Zhe97/Wuy2 QTL 2004 - 6 AQEI113 QTL 75.7 - 92.8 (cM) qtl_marker View Maps
Oryza sativa - M202/IR50 UCD QTL 2003 - 6 RM162 SSR 64.1 (cM) Marker Identity View Maps
Oryza sativa - LSU Caiapo/IRGC103544 QTL 2004 - 6 AQFU029 QTL 116 (cM) qtl_marker View Maps
RM20356 SSR 24,036,777 - 24,036,976 No other positions
RM20360 SSR 24,079,122 - 24,079,513 No other positions