grain_iconCMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Saved Links | Help | Tutorial  
*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Wheat-Wheat composite QTL 2004
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps 7B
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
AFLP
Gene
Marker
RFLP
SSR
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
IAGP
Marker Identity
ISS
Wheat EST Breakpoint Interval
Amplified segment
Maize bin marker
centromeric_marker
Clone end
Collinear block
Constituent clone
contained_in_sequence
EST cluster
hybridisation
maizegdb_to_gramene
Mapped contig to clone
mate_pair
qtl_marker
related_probe
related_sequence
Shared sequence
Shared synonym
Source sequence
Subclone
Synteny
Synteny block
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: QTL [ View Map Type Info ]
Map Set Name: Wheat - Wheat composite QTL 2004 [ View Map Set Info ]
Map Name: 7B
Map Start: 0 cM
Map Stop: 193 cM
Features by Type:
54 AFLP
1 Gene
5 Marker
64 RFLP
72 SSR
196 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 196.       of 8 | Next
Wheat - Wheat composite QTL 2004 - 7B
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
Xgwm46a SSR 0 Wheat - Composite 2004 - 7B Xgwm46b SSR 41 (cM) Marker Identity View Maps
Wheat - Consensus SSR 2004 - 7B Xgwm46-7B SSR 53.5 (cM) Marker Identity View Maps
Wheat - Composite 2004 - 7B Xgwm46a SSR 0 (cM) Marker Identity View Maps
Xwmc323 SSR 0 Wheat - Composite 2004 - 7B Xwmc323 SSR 0 (cM) Marker Identity View Maps
Wheat - Consensus SSR 2004 - 7B Xwmc323-7B SSR 1.2 (cM) Marker Identity View Maps
P31/M52-1 AFLP 4 No other positions
Xgwm569 SSR 4 Wheat - Composite 2004 - 7B Xgwm569 SSR 4 (cM) Marker Identity View Maps
Wheat - Consensus SSR 2004 - 7B Xgwm569-7B SSR 7.9 (cM) Marker Identity View Maps
Xwmc338 SSR 10 Wheat - Composite 2004 - 7B Xwmc338 SSR 10 (cM) Marker Identity View Maps
P35/M52-4 AFLP 16 No other positions
Xgwm350c SSR 17 Wheat - Composite 2004 - 7A Xgwm350a SSR 1 (cM) Marker Identity View Maps
Wheat - Consensus SSR 2004 - 7D Xgwm350-7D SSR 0 (cM) Marker Identity View Maps
Wheat - Composite 2004 - 4A Xgwm350.2 SSR 108 (cM) Marker Identity View Maps
Wheat - Consensus SSR 2004 - 7A Xgwm350-7A SSR 11.3 (cM) Marker Identity View Maps
Wheat - Composite 2004 - 7B Xgwm350c SSR 17 (cM) Marker Identity View Maps
Wheat - Composite 2004 - 7A Xgwm350b SSR 24 (cM) Marker Identity View Maps
Xcdo545b RFLP 18 Wheat - Composite 2004 - 7B Xcdo545b RFLP 18 (cM) Marker Identity View Maps
Maize - Cornell Wilson 1999 - 6 CDO545 RFLP 26.4 (cM) Marker Identity View Maps
Wheat - Cornell Synthetic/Opata 1995 - 4A Xcdo545-4A RFLP 99.5 (cM) Marker Identity View Maps
Barley - Barley consensus 2 - 1996 - 7H CDO545 RFLP 13.4 (cM) Marker Identity View Maps
Barley - Barley consensus - 1995 - 7H CDO545 RFLP -59.3 (cM) Marker Identity View Maps
Wheat - Synthetic/Opata RI RFLP/SSR QT - 7A Xcdo545-7A RFLP 0 (cM) Marker Identity View Maps
Maize - Maize Bins QTL 2005 - 6 Bin 6.01 Maize Bin 22.8 - 34.7 (cM) Maize bin marker View Maps
Wheat - Synthetic/Opata RI RFLP/SSR QT - 4A Xcdo545-4A RFLP 99.5 (cM) Marker Identity View Maps
Oryza sativa japonica - Gramene Annot Seq 2009 - Chr. 6 CDO545 RFLP 886,290 - 886,368 (bp) Marker Identity View Maps
Maize - IBM2 2008 Neighbors - 6 cdo545 Probed site 86.9 (cM) maizegdb_to_gramene View Maps
Maize - Bins - 6 Bin 6.01 Maize Bin 22.8 - 34.7 (bins) Maize bin marker View Maps
Wheat - Composite 2004 - 7A Xcdo545 RFLP 5 (cM) Marker Identity View Maps
Oat - Cornell Diploid 1995 - D CDO545 RFLP 16.2 (cM) Marker Identity View Maps
Oat - Oat, KxO, 2003 - 17 CDO545 RFLP 35.2 (cM) Marker Identity View Maps
Oryza sativa x Oryza longistaminata - Cornell RFLP 1994 - 6 CDO545 RFLP -6.8 (cM) Marker Identity View Maps
Wheat - Cornell Synthetic/Opata 1995 - 7A Xcdo545-7A RFLP 0 (cM) Marker Identity View Maps
Wheat - Composite 2004 - 4A Xcdo545.2 RFLP 126 (cM) Marker Identity View Maps
Maize - IBM 2002 - 6 CDO545 RFLP 71.7 (cM) Marker Identity View Maps
Oryza sativa japonica - Gramene Annot Seq 2009 - Chr. 6 CDO545 RFLP 886,290 - 886,836 (bp) Marker Identity View Maps
Xfbb121b RFLP 18 Wheat - Composite 2004 - 5B Xfbb121a RFLP 61 (cM) Marker Identity View Maps
Wheat - Composite 2004 - 2B Xfbb121.5 RFLP 45 (cM) Marker Identity View Maps
Wheat - Cornell Synthetic/Opata 1995 - 7A Xfbb121-7A RFLP 7.1 (cM) Marker Identity View Maps
Wheat - Synthetic/Opata RI RFLP/SSR QT - 2B Xfbb121-2B RFLP 28.2 (cM) Marker Identity View Maps
Wheat - Cornell Synthetic/Opata 1995 - 5B Xfbb121-5B.1 RFLP 8.1 (cM) Marker Identity View Maps
Wheat - Cornell Synthetic/Opata 1995 - 4B Xfbb121-4B RFLP 12.4 (cM) Marker Identity View Maps
Wheat - Composite 2004 - 7A Xfbb121 RFLP 2 (cM) Marker Identity View Maps
Wheat - Cornell Synthetic/Opata 1995 - 2B Xfbb121-2B RFLP 28.2 (cM) Marker Identity View Maps
Wheat - Synthetic/Opata RI RFLP/SSR QT - 4B Xfbb121-4B RFLP 12.4 (cM) Marker Identity View Maps
Wheat - Synthetic/Opata RI RFLP/SSR QT - 7A Xfbb121-7A RFLP 7.1 (cM) Marker Identity View Maps
Wheat - Composite 2004 - 4B Xfbb121.1 RFLP 23 (cM) Marker Identity View Maps
Wheat - Composite 2004 - 7B Xfbb121b RFLP 18 (cM) Marker Identity View Maps
Wheat - Composite 2004 - 5B Xfbb121.2 RFLP 31 (cM) Marker Identity View Maps
Wheat - Composite 2004 - 1B Xfbb121c RFLP 58 (cM) Marker Identity View Maps
Wheat - Cornell Synthetic/Opata 1995 - 5B Xfbb121-5B.2 RFLP 44.1 (cM) Marker Identity View Maps
Wheat - Synthetic/Opata RI RFLP/SSR QT - 5B Xfbb121-5B.2 RFLP 44.1 (cM) Marker Identity View Maps
Wheat - Synthetic/Opata RI RFLP/SSR QT - 5B Xfbb121-5B.1 RFLP 8.1 (cM) Marker Identity View Maps
Xgwm537 SSR 20 Tetraploid wheat - ICARDA Omra/T.dico QTL 2004 - 7B Xgwm537-7B SSR 49.3 (cM) Marker Identity View Maps
Tetraploid wheat - ICARDA Omra/T.dico QTL 2004 - 5B Xgwm537-5B SSR 209.5 (cM) Marker Identity View Maps
Wheat - Composite 2004 - 7B Xgwm537 SSR 20 (cM) Marker Identity View Maps
Wheat - Consensus SSR 2004 - 7B Xgwm537-7B SSR 35.2 (cM) Marker Identity View Maps
P41/M58-169 AFLP 21 No other positions
Xgwm400 SSR 23 Wheat - Consensus SSR 2004 - 7B Xgwm400-7B SSR 40 (cM) Marker Identity View Maps
Wheat - Composite 2004 - 7B Xgwm400 SSR 23 (cM) Marker Identity View Maps
Tetraploid wheat - ICARDA Omra/T.dico QTL 2004 - 7B Xgwm400-7B SSR 22 (cM) Marker Identity View Maps
Xglk301 RFLP 24 Wheat - Composite 2004 - 7B Xglk301 RFLP 24 (cM) Marker Identity View Maps
P32/M62-5 AFLP 25 No other positions
Xwmc76 SSR 25 Wheat - Composite 2004 - 7B Xwmc76 SSR 25 (cM) Marker Identity View Maps
Wheat - Consensus SSR 2004 - 7B Xwmc76-7B SSR 33.1 (cM) Marker Identity View Maps
Xwmc335 SSR 28 Wheat - Composite 2004 - 7B Xwmc335 SSR 28 (cM) Marker Identity View Maps
Wheat - Consensus SSR 2004 - 7B Xwmc335-7B SSR 57.9 (cM) Marker Identity View Maps
Xwmc476 SSR 28 Wheat - Consensus SSR 2004 - 7B Xwmc476-7B SSR 60 (cM) Marker Identity View Maps
Wheat - Composite 2004 - 7B Xwmc476 SSR 28 (cM) Marker Identity View Maps
Xwmc364a SSR 29 Wheat - Composite 2004 - 7B Xwmc364a SSR 29 (cM) Marker Identity View Maps
Wheat - Consensus SSR 2004 - 7B Xwmc364-7B SSR 60 (cM) Marker Identity View Maps
Xwmc471b SSR 29 Wheat - Consensus SSR 2004 - 3B Xwmc471-3B SSR 68.7 (cM) Marker Identity View Maps
Wheat - Composite 2004 - 7B Xwmc471b SSR 29 (cM) Marker Identity View Maps
Wheat - Composite 2004 - 3B Xwmc471 SSR 45 (cM) Marker Identity View Maps
Wheat - Consensus SSR 2004 - 7B Xwmc471-7B SSR 60.2 (cM) Marker Identity View Maps
Xwmc435i SSR 30 Wheat - Consensus SSR 2004 - 5B Xwmc435-5B SSR 68.7 (cM) Marker Identity View Maps
Wheat - Consensus SSR 2004 - 3D Xwmc435-3D SSR 34.9 (cM) Marker Identity View Maps
Wheat - Composite 2004 - 7B Xwmc435i SSR 30 (cM) Marker Identity View Maps
Wheat - Composite 2004 - 3D Xwmc435g SSR 60 (cM) Marker Identity View Maps
Wheat - Composite 2004 - 5B Xwmc435b SSR 31 (cM) Marker Identity View Maps
Wheat - Composite 2004 - 2B Xwmc435.1 SSR 99 (cM) Marker Identity View Maps
Wheat - Consensus SSR 2004 - 7B Xwmc435-7B SSR 64.8 (cM) Marker Identity View Maps
Xgwm60 SSR 31 Tetraploid wheat - ICARDA Omra/T.dico QTL 2004 - 7A Xgwm60-7A.2 SSR 15.5 (cM) Marker Identity View Maps
Wheat - Consensus SSR 2004 - 7A Xgwm60-7A SSR 29.6 (cM) Marker Identity View Maps
Wheat - Composite 2004 - 7A Xgwm60a SSR 34 (cM) Marker Identity View Maps
Wheat - Composite 2004 - 7B Xgwm60 SSR 31 (cM) Marker Identity View Maps
Tetraploid wheat - ICARDA Omra/T.dico QTL 2004 - 7A AQFN007 QTL 15.5 (cM) qtl_marker View Maps
Tetraploid wheat - ICARDA Omra/T.dico QTL 2004 - 7A Xgwm60-7A.1 SSR 18.9 (cM) Marker Identity View Maps
Wheat - Composite 2004 - 7A Xgwm60b SSR 60 (cM) Marker Identity View Maps
S18M18_11 AFLP 31 No other positions
S18M20_4 AFLP 32 No other positions
Xgwm68.2 SSR 32 Wheat - Composite 2004 - 5B Xgwm68b SSR 47 (cM) Marker Identity View Maps
Wheat - Composite 2004 - 7B Xgwm68.2 SSR 32 (cM) Marker Identity View Maps
Wheat - Consensus SSR 2004 - 7B Xgwm68-7B SSR 41.2 (cM) Marker Identity View Maps
Wheat - Composite 2004 - 5B Xgwm68a SSR 21 (cM) Marker Identity View Maps
Wheat - Consensus SSR 2004 - 5B Xgwm68-5B SSR 64.3 (cM) Marker Identity View Maps
Xfba248 RFLP 34 Wheat - Composite 2004 - 7A Xfba248b RFLP 55 (cM) Marker Identity View Maps
Wheat - Composite 2004 - 7B Xfba248 RFLP 34 (cM) Marker Identity View Maps
Wheat - Cornell Synthetic/Opata 1995 - 7A Xfba248-7A RFLP 78.6 (cM) Marker Identity View Maps
Wheat - Composite 2004 - 7A Xfba248a RFLP 38 (cM) Marker Identity View Maps
Wheat - Synthetic/Opata RI RFLP/SSR QT - 7A Xfba248-7A RFLP 78.6 (cM) Marker Identity View Maps