grain_iconCMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Saved Links | Help | Tutorial  
*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Wheat-Wheat composite QTL 2004
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps 5B
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
AFLP
Gene
Marker
RFLP
SSR
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
IAGP
Marker Identity
ISS
Wheat EST Breakpoint Interval
Amplified segment
Maize bin marker
centromeric_marker
Clone end
Collinear block
Constituent clone
contained_in_sequence
EST cluster
hybridisation
maizegdb_to_gramene
Mapped contig to clone
mate_pair
qtl_marker
related_probe
related_sequence
Shared sequence
Shared synonym
Source sequence
Subclone
Synteny
Synteny block
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: QTL [ View Map Type Info ]
Map Set Name: Wheat - Wheat composite QTL 2004 [ View Map Set Info ]
Map Name: 5B
Map Start: 0 cM
Map Stop: 165 cM
Features by Type:
47 AFLP
1 Gene
6 Marker
97 RFLP
74 SSR
225 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 225.       of 9 | Next
Wheat - Wheat composite QTL 2004 - 5B
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
Xfbb276a RFLP 1 Wheat - Composite 2004 - 5B Xfbb276a RFLP 1 (cM) Marker Identity View Maps
Wheat - Cornell Synthetic/Opata 1995 - 5B Xfbb276-5B RFLP -2 (cM) Marker Identity View Maps
Wheat - Synthetic/Opata RI RFLP/SSR QT - 2A Xfbb276-2A RFLP 152.2 (cM) Marker Identity View Maps
Wheat - Cornell Synthetic/Opata 1995 - 2A Xfbb276-2A RFLP 152.2 (cM) Marker Identity View Maps
Wheat - Synthetic/Opata RI RFLP/SSR QT - 5B Xfbb276-5B RFLP -2 (cM) Marker Identity View Maps
Wheat - Composite 2004 - 5A Xfbb276b RFLP 2 (cM) Marker Identity View Maps
P32/M47-1 AFLP 6 No other positions
P31/M49-3 AFLP 8 No other positions
Xgpw1056 SSR 8 Wheat - Composite 2004 - 5B Xgpw1056 SSR 8 (cM) Marker Identity View Maps
P35/M52-3 AFLP 9 No other positions
P31/M57-3 AFLP 10 No other positions
Xcdo749a RFLP 10 Wheat - Synthetic/Opata RI RFLP/SSR QT - 5A Xcdo749-5A RFLP 3.3 (cM) Marker Identity View Maps
Maize - Maize Bins QTL 2005 - 1 Bin 1.05 Maize Bin 88.5 - 112.9 (cM) Maize bin marker View Maps
Wheat - Composite 2004 - 5B Xcdo749a RFLP 10 (cM) Marker Identity View Maps
Barley - Barley consensus 2 - 1996 - 5H CDO749 RFLP 51.7 (cM) Marker Identity View Maps
Barley - NABGMP SxM 1993 - 5 CDO749 RFLP 46.9 (cM) Marker Identity View Maps
Maize - Bins - 1 Bin 1.05 Maize Bin 88.5 - 112.9 (bins) Maize bin marker View Maps
Barley - JIC Igr/Tri QTL 1995 - 5H Xcdo749 RFLP -6.8 (cM) Marker Identity View Maps
Barley - JIC Igr/Tri QTL 1995 - 5H AQDG012 QTL -21 - 40 (cM) qtl_marker View Maps
Barley - Steptoe/Morex DH RFLP QTL 2006 - 5H CDO749 RFLP 46.9 (cM) Marker Identity View Maps
Wheat - Composite 2004 - 5A Xcdo749.1 RFLP 20 (cM) Marker Identity View Maps
Oryza sativa japonica - Gramene Annot Seq 2009 - Chr. 12 CDO749 RFLP 25,545,588 - 25,546,673 (bp) Marker Identity View Maps
Wheat - Cornell Synthetic/Opata 1995 - 5A Xcdo749-5A RFLP 3.3 (cM) Marker Identity View Maps
Maize - IBM2 2008 Neighbors - 1 cdo749 Probed site 460.64 (cM) maizegdb_to_gramene View Maps
Barley - JIC Igr/Tri QTL 1995 - 5H AQDG022 QTL -21 - 40 (cM) qtl_marker View Maps
Oryza sativa japonica - Gramene Annot Seq 2009 - Chr. 12 BE439218 EST 25,545,588 - 25,546,673 (bp) related_sequence View Maps
Barley - Barley consensus 2003 - 5H CDO749 RFLP 22.7 (cM) Marker Identity View Maps
Wheat - Synthetic/Opata RI RFLP/SSR QT - 5B Xcdo749-5B RFLP 24.2 (cM) Marker Identity View Maps
Oat - Cornell Diploid 1995 - F CDO749 RFLP 55.3 (cM) Marker Identity View Maps
Barley - Steptoe/Morex DH RFLP QTL 2006 - 5H AQGY003 QTL 46.21 (cM) qtl_marker View Maps
Wheat - Cornell Synthetic/Opata 1995 - 5B Xcdo749-5B RFLP 24.2 (cM) Marker Identity View Maps
Wheat - Composite 2004 - 5B Xcdo749b RFLP 44 (cM) Marker Identity View Maps
Barley - Barley consensus - 1995 - 5H CDO749 RFLP -7.2 (cM) Marker Identity View Maps
Maize - Cornell Wilson 1999 - 1 CDO749 RFLP 98.3 (cM) Marker Identity View Maps
Xpsr326a RFLP 10 Oryza sativa japonica - Gramene Annot Seq 2009 - Chr. 12 CQE87-SLFAR QTL 3,885,926 - 27,489,485 (bp) qtl_marker View Maps
Oryza sativa - JRGP Nip/Kas F2 QTL 2000 - 12 CQE84 QTL 91.4 - 103.1 (cM) qtl_marker View Maps
Oryza sativa japonica - Gramene Annot Seq 2009 - Chr. 12 CQE86-RAAB QTL 3,885,926 - 27,489,485 (bp) qtl_marker View Maps
Oryza sativa - JRGP Nip/Kas F2 QTL 2000 - 12 CQE87 QTL 91.4 - 109.5 (cM) qtl_marker View Maps
Oryza sativa japonica - Gramene Annot Seq 2009 - Chr. 12 CQE83-PTHT QTL 3,885,926 - 27,489,485 (bp) qtl_marker View Maps
Oryza sativa - JRGP Nip/Kas F2 QTL 2000 - 12 AQCI012 QTL 97.3 - 109.5 (cM) qtl_marker View Maps
Oryza sativa japonica - Gramene Annot Seq 2009 - Chr. 12 AQDZ005-LOI QTL 3,885,926 - 27,489,485 (bp) qtl_marker View Maps
Barley - Barley consensus 2003 - 5H PSR326 RFLP 36 (cM) Marker Identity View Maps
Oryza sativa japonica - Gramene Annot Seq 2009 - Chr. 12 CQE84-PTHT QTL 3,885,926 - 26,108,114 (bp) qtl_marker View Maps
Oryza sativa - JRGP Nip/Kas F2 QTL 2000 - 12 CQE85 QTL 91.4 - 103.1 (cM) qtl_marker View Maps
Wheat - Composite 2004 - 5D Xpsr326b RFLP 25 (cM) Marker Identity View Maps
Wheat - wEST 2003 - 5B 5BS5-0.71-0.81 Breakpoint Interval -0.81 - -0.71 (Arm fraction) Wheat EST Breakpoint Interval View Maps
Oryza sativa - JRGP Nip/Kas F2 QTL 2000 - 12 CQE83 QTL 64.7 - 109.5 (cM) qtl_marker View Maps
Oryza sativa japonica - Gramene Annot Seq 2009 - Chr. 12 AQCI012-PHOSN QTL 3,885,926 - 27,489,485 (bp) qtl_marker View Maps
Oryza sativa - JRGP Nip/Kas F2 QTL 2000 - 12 AQDZ005 QTL 97.3 - 109.5 (cM) qtl_marker View Maps
Oryza sativa japonica - Gramene Annot Seq 2009 - Chr. 12 CQE85-CHLCN QTL 3,885,926 - 26,108,114 (bp) qtl_marker View Maps
Wheat - Composite 2004 - 5B Xpsr326b RFLP 49 (cM) Marker Identity View Maps
Wheat - Composite 2004 - 5B Xpsr326a RFLP 10 (cM) Marker Identity View Maps
Wheat - Composite 2004 - 5A Xpsr326.1 RFLP 18 (cM) Marker Identity View Maps
Wheat - wEST 2003 - 5A 5AS3-0.75-0.98 Breakpoint Interval -0.98 - -0.75 (Arm fraction) Wheat EST Breakpoint Interval View Maps
Oryza sativa - CIRAD IR64/Azu DH QTL 2003 - 12 PSR326 RFLP 96.8 (cM) Marker Identity View Maps
Oryza sativa - JRGP Nip/Kas F2 QTL 2000 - 12 W326 RFLP 100.9 (cM) Marker Identity View Maps
Oryza sativa - JRGP Nip/Kas F2 QTL 2000 - 12 CQE86 QTL 97.3 - 109.5 (cM) qtl_marker View Maps
Wheat - wEST 2003 - 5D 5DS2-0.78-1.00 Breakpoint Interval -1 - -0.78 (Arm fraction) Wheat EST Breakpoint Interval View Maps
Oryza sativa - JRGP RFLP 2000 - 12 W326 RFLP 100.9 (cM) Marker Identity View Maps
Xpsr929a RFLP 10 Wheat - Synthetic/Opata RI RFLP/SSR QT - 5B Xpsr929-5B RFLP 26.9 (cM) Marker Identity View Maps
Barley - Barley consensus 2003 - 7H PSR929b RFLP 75.2 (cM) Marker Identity View Maps
Barley - Barley consensus 2003 - 1H PSR929a RFLP 38.6 (cM) Marker Identity View Maps
Barley - JIC Igr/Tri QTL 1995 - 1H Xpsr929a RFLP 15.5 (cM) Marker Identity View Maps
Wheat - Cornell Synthetic/Opata 1995 - 5B Xpsr929-5B RFLP 26.9 (cM) Marker Identity View Maps
Barley - JIC Igr/Tri QTL 1995 - 2H Xpsr929d RFLP 93.2 (cM) Marker Identity View Maps
Wheat - Composite 2004 - 5B Xpsr929b RFLP 44 (cM) Marker Identity View Maps
Wheat - Composite 2004 - 5B Xpsr929a RFLP 10 (cM) Marker Identity View Maps
Rye - Rye, Ds2 x RxL10 1993 - 5R Xpsr929 RFLP 0 (cM) Marker Identity View Maps
P42/M60-4 AFLP 10 No other positions
P32/M48-234 AFLP 10 No other positions
Xgwm443.2 SSR 12 Wheat - Composite 2004 - 5A Xgwm443.1 SSR 7 (cM) Marker Identity View Maps
Wheat - Composite 2004 - 5B Xgwm443.2 SSR 12 (cM) Marker Identity View Maps
Wheat - Consensus SSR 2004 - 5B Xgwm443-5B SSR 31.6 (cM) Marker Identity View Maps
Tetraploid wheat - ICARDA Omra/T.dico QTL 2004 - 5A Xgwm443-5A SSR 26.7 (cM) Marker Identity View Maps
Wheat - Consensus SSR 2004 - 5A Xgwm443-5A SSR 23.7 (cM) Marker Identity View Maps
P38/M59-114 AFLP 12 No other positions
Xfba232a RFLP 14 Wheat - Composite 2004 - 5B Xfba232a RFLP 14 (cM) Marker Identity View Maps
Wheat - Synthetic/Opata RI RFLP/SSR QT - 5B Xfba232-5B RFLP 25.6 (cM) Marker Identity View Maps
Wheat - Composite 2004 - 5B Xfba232b RFLP 46 (cM) Marker Identity View Maps
Wheat - Cornell Synthetic/Opata 1995 - 5B Xfba232-5B RFLP 25.6 (cM) Marker Identity View Maps
Xgpw1072 SSR 16 Wheat - Composite 2004 - 5B Xgpw1072 SSR 16 (cM) Marker Identity View Maps
Xfbb238 RFLP 16 Wheat - Composite 2004 - 5D Xfbb238 RFLP 13 (cM) Marker Identity View Maps
Wheat - Synthetic/Opata RI RFLP/SSR QT - 5D Xfbb238-5D RFLP 9.4 (cM) Marker Identity View Maps
Wheat - Cornell Synthetic/Opata 1995 - 7A Xfbb238-7A RFLP 230.3 (cM) Marker Identity View Maps
Wheat - Synthetic/Opata RI RFLP/SSR QT - 7A Xfbb238-7A RFLP 230.3 (cM) Marker Identity View Maps
Wheat - Cornell Synthetic/Opata 1995 - 5D Xfbb238-5D RFLP 9.4 (cM) Marker Identity View Maps
Wheat - Composite 2004 - 5B Xfbb238 RFLP 16 (cM) Marker Identity View Maps
Xcdo1335 RFLP 17 Barley - Barley consensus 2003 - 5H CDO1335B RFLP 14.7 (cM) Marker Identity View Maps
Oryza sativa x Oryza longistaminata - Cornell RFLP 2001 - 12 CDO1335A RFLP 94.9 (cM) Marker Identity View Maps
Wheat - Composite 2004 - 5B Xcdo1335 RFLP 17 (cM) Marker Identity View Maps
Oryza sativa x Oryza longistaminata - Cornell RFLP 2001 - 7 CDO1335B RFLP 30.65 (cM) Marker Identity View Maps
Oryza sativa x Oryza longistaminata - Cornell RFLP 1994 - 12 CDO1335A RFLP 77.7 (cM) Marker Identity View Maps
Barley - Barley consensus 2003 - 2H CDO1335A RFLP 108.8 (cM) Marker Identity View Maps
Oat - Oat, KxO, 2003 - 30 CDO1335 RFLP 12.2 (cM) Marker Identity View Maps
Oryza sativa x Oryza longistaminata - Cornell RFLP 1994 - 7 CDO1335B RFLP 62.1 (cM) Marker Identity View Maps
Oat - Cornell Diploid 1995 - F CDO1335 RFLP 55.3 (cM) Marker Identity View Maps
Oryza sativa japonica - Gramene Annot Seq 2009 - Chr. 12 BE439246 EST 23,124,532 - 23,125,096 (bp) related_sequence View Maps
Oryza sativa japonica - Gramene Annot Seq 2009 - Chr. 12 CDO1335 RFLP 23,124,532 - 23,125,096 (bp) Marker Identity View Maps
P78/M72.3 AFLP 17 No other positions
Xfba393a RFLP 17 Wheat - Composite 2004 - 5B Xfba393a RFLP 17 (cM) Marker Identity View Maps
Wheat - Synthetic/Opata RI RFLP/SSR QT - 5D Xfba393-5D RFLP 0 (cM) Marker Identity View Maps
Wheat - Cornell Synthetic/Opata 1995 - 5D Xfba393-5D RFLP 0 (cM) Marker Identity View Maps
Wheat - Composite 2004 - 1A Xfba393 RFLP 21 (cM) Marker Identity View Maps
Wheat - Composite 2004 - 5B Xfba393b RFLP 40 (cM) Marker Identity View Maps
Wheat - Cornell Synthetic/Opata 1995 - 5B Xfba393-5B RFLP 17.9 (cM) Marker Identity View Maps
Wheat - Composite 2004 - 5D Xfba393b RFLP 10 (cM) Marker Identity View Maps
Wheat - Synthetic/Opata RI RFLP/SSR QT - 5B Xfba393-5B RFLP 17.9 (cM) Marker Identity View Maps
Xfba342a RFLP 18 Wheat - Composite 2004 - 5B Xfba342b RFLP 42 (cM) Marker Identity View Maps
Wheat - Synthetic/Opata RI RFLP/SSR QT - 5B Xfba342-5B RFLP 19.3 (cM) Marker Identity View Maps
Wheat - Cornell Synthetic/Opata 1995 - 5B Xfba342-5B RFLP 19.3 (cM) Marker Identity View Maps
Wheat - Composite 2004 - 5B Xfba342a RFLP 18 (cM) Marker Identity View Maps
Xfbb277.1 RFLP 19 Wheat - Composite 2004 - 3A Xfbb277.2 RFLP 85 (cM) Marker Identity View Maps
Wheat - Composite 2004 - 5B Xfbb277.1 RFLP 19 (cM) Marker Identity View Maps
Wheat - Composite 2004 - 5A Xfbb277c RFLP 2 (cM) Marker Identity View Maps
Wheat - Synthetic/Opata RI RFLP/SSR QT - 3A Xfbb277-3A RFLP 85.3 (cM) Marker Identity View Maps
Wheat - Synthetic/Opata RI RFLP/SSR QT - 5B Xfbb277-5B RFLP -4 (cM) Marker Identity View Maps
Wheat - Cornell Synthetic/Opata 1995 - 3A Xfbb277-3A RFLP 85.3 (cM) Marker Identity View Maps
Wheat - Cornell Synthetic/Opata 1995 - 5B Xfbb277-5B RFLP -4 (cM) Marker Identity View Maps
Xfbb161 RFLP 19 Wheat - Composite 2004 - 5B Xfbb161 RFLP 19 (cM) Marker Identity View Maps
Xgwm159a SSR 19 Wheat - Consensus SSR 2004 - 5B Xgwm159-5B SSR 56.8 (cM) Marker Identity View Maps
Wheat - Consensus SSR 2004 - 5D Xgwm159-5D SSR 27.5 (cM) Marker Identity View Maps
Wheat - Composite 2004 - 5B Xgwm159b SSR 46 (cM) Marker Identity View Maps
Wheat - Composite 2004 - 5B Xgwm159a SSR 19 (cM) Marker Identity View Maps
Xgwm234 SSR 21 Tetraploid wheat - ICARDA Omra/T.dico QTL 2004 - 5A Xgwm234-5A SSR 20.8 (cM) Marker Identity View Maps
Wheat - Consensus SSR 2004 - 5B Xgwm234-5B SSR 38.1 (cM) Marker Identity View Maps
Wheat - Composite 2004 - 5B Xgwm234 SSR 21 (cM) Marker Identity View Maps
Tetraploid wheat - ICARDA Omra/T.dico QTL 2004 - 5B Xgwm234-5B SSR 57.3 (cM) Marker Identity View Maps
Xgwm68a SSR 21 Wheat - Composite 2004 - 5B Xgwm68a SSR 21 (cM) Marker Identity View Maps
Wheat - Consensus SSR 2004 - 5B Xgwm68-5B SSR 64.3 (cM) Marker Identity View Maps
Wheat - Composite 2004 - 5B Xgwm68b SSR 47 (cM) Marker Identity View Maps
Wheat - Composite 2004 - 7B Xgwm68.2 SSR 32 (cM) Marker Identity View Maps
Wheat - Consensus SSR 2004 - 7B Xgwm68-7B SSR 41.2 (cM) Marker Identity View Maps