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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Brachypodium distachyon-Brachypodium distachyon 1.0
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Chr. 5
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
EST
EST Cluster
Gene Prediction
mRNA
Synteny block
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
IAGP
Marker Identity
ISS
Wheat EST Breakpoint Interval
Amplified segment
Maize bin marker
centromeric_marker
Clone end
Collinear block
Constituent clone
contained_in_sequence
EST cluster
hybridisation
maizegdb_to_gramene
Mapped contig to clone
mate_pair
qtl_marker
related_probe
related_sequence
Shared sequence
Shared synonym
Source sequence
Subclone
Synteny
Synteny block
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Sequence [ View Map Type Info ]
Map Set Name: Brachypodium distachyon - Brachypodium distachyon 1.0 [ View Map Set Info ]
Map Name: Chr. 5
Map Start: 1
Map Stop: 28,429,713
Features by Type:
12,313 EST
8,621 EST Cluster
1,854 Gene Prediction
11,965 mRNA
33 Synteny block
34,786 Total

Map Features

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Items 1 to 25 of 34,786.       of 1,392 | Next
Brachypodium distachyon - Brachypodium distachyon 1.0 - Chr. 5
(Click headers to resort)		 Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
BE518837 EST 8,688,943 - 8,688,981 No other positions
BE519079 EST 8,688,943 - 8,688,981 No other positions
BE530908 EST 10,404,505 - 10,404,535 No other positions
BE585543 EST 12,295,092 - 12,295,442 Wheat - wEST 2003 - 4A 4AL5-0.66-0.80 Breakpoint Interval 0.66 - 0.8 (Arm fraction) Wheat EST Breakpoint Interval View Maps
Wheat - wEST 2003 - 3A 3AL5-0.78-1.00 Breakpoint Interval 0.78 - 1 (Arm fraction) Wheat EST Breakpoint Interval View Maps
Wheat - wEST 2003 - 7A 7AS5-0.59-0.89 Breakpoint Interval -0.89 - -0.59 (Arm fraction) Wheat EST Breakpoint Interval View Maps
Wheat - wEST 2003 - 7D 7DS4-0.61-1.00 Breakpoint Interval -1 - -0.61 (Arm fraction) Wheat EST Breakpoint Interval View Maps
BE590568 EST 17,158,889 - 17,159,327 Wheat - wEST 2003 - 7D 7DL5-0.30-0.61 Breakpoint Interval 0.3 - 0.61 (Arm fraction) Wheat EST Breakpoint Interval View Maps
BE607365 EST 21,225,782 - 21,226,036 No other positions
BE639844 EST 2,159,545 - 2,159,838 No other positions
BE644252 EST 41,134 - 41,334 No other positions
BE644252 EST 81,453 - 81,653 No other positions
BE644252 EST 89,511 - 89,711 No other positions
BE644252 EST 97,582 - 97,782 No other positions
CO435622 EST 26,761,699 - 26,761,742 No other positions
CO435637 EST 10,404,369 - 10,404,404 No other positions
CO435654 EST 27,136,134 - 27,136,165 No other positions
CO435671 EST 23,114,587 - 23,114,650 No other positions
CO435680 EST 14,043,412 - 14,043,524 No other positions
CO435700 EST 17,950,638 - 17,950,749 No other positions
CO435775 EST 25,680,592 - 25,680,978 No other positions
CO435804 EST 12,723,366 - 12,724,101 No other positions
CO435869 EST 9,775,397 - 9,775,429 No other positions
CO435869 EST 25,025,423 - 25,025,452 No other positions
CO436039 EST 18,020,862 - 18,020,894 No other positions
CO436059 EST 16,773,481 - 16,773,849 No other positions
CR278237 EST 18,020,863 - 18,020,892 No other positions
CR278369 EST 7,641,083 - 7,641,147 No other positions