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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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Map Set Brachypodium distachyon-Brachypodium distachyon 1.0
(Reference Set)
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Correspondences
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Maps Chr. 2
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Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
EST
EST Cluster
Gene Prediction
mRNA
Synteny block
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
IAGP
Marker Identity
ISS
Wheat EST Breakpoint Interval
Amplified segment
Maize bin marker
centromeric_marker
Clone end
Collinear block
Constituent clone
contained_in_sequence
EST cluster
hybridisation
maizegdb_to_gramene
Mapped contig to clone
mate_pair
qtl_marker
related_probe
related_sequence
Shared sequence
Shared synonym
Source sequence
Subclone
Synteny
Synteny block
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Sequence [ View Map Type Info ]
Map Set Name: Brachypodium distachyon - Brachypodium distachyon 1.0 [ View Map Set Info ]
Map Name: Chr. 2
Map Start: 1
Map Stop: 59,328,649
Features by Type:
31,278 EST
21,089 EST Cluster
4,547 Gene Prediction
28,533 mRNA
55 Synteny block
85,502 Total

Map Features

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Items 1 to 25 of 85,502.       of 3,421 | Next
Brachypodium distachyon - Brachypodium distachyon 1.0 - Chr. 2
(Click headers to resort)		 Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
AA030713 EST 10,630,001 - 10,630,192 Maize - UMC 1998 - 5 csu377b(ubi) RFLP 86.7 (cM) contained_in_sequence View Maps
Sorghum - Paterson 2003 - I CSU377b RFLP 33.9 (cM) contained_in_sequence View Maps
Maize - UMC 1998 - 4 csu377a(ubi) RFLP 153.7 (cM) contained_in_sequence View Maps
Sorghum - Paterson 2003 - F CSU377a RFLP 95.4 (cM) contained_in_sequence View Maps
AA054817 EST 14,370,945 - 14,371,457 Maize - FPC maize May 2006 - ctg289 SOG0477 OVERGO 205 (bands) contained_in_sequence View Maps
Maize - AGI FPC Oct 2004 - ctg766 SOG0477 OVERGO 35 - 62 (bands) contained_in_sequence View Maps
Maize - AGI FPC Oct 2004 - ctg182 SOG0477 OVERGO 302 - 326 (bands) contained_in_sequence View Maps
Maize - AGI FPC Oct 2004 - ctg142 SOG0477 OVERGO 584 - 600 (bands) contained_in_sequence View Maps
Maize - FPC maize May 2006 - ctg320 SOG0477 OVERGO 1,754 (bands) contained_in_sequence View Maps
Maize - FPC maize May 2006 - ctg188 SOG0477 OVERGO 1,381 (bands) contained_in_sequence View Maps
Maize - FPC maize May 2006 - ctg150 SOG0477 OVERGO 593 (bands) contained_in_sequence View Maps
Maize - FPC maize May 2006 - ctg727 SOG0477 OVERGO 48 (bands) contained_in_sequence View Maps
Maize - FPC maize May 2006 - ctg357 SOG0477 OVERGO 56 (bands) contained_in_sequence View Maps
Maize - AGI FPC Oct 2004 - ctg280 SOG0477 OVERGO 184 - 225 (bands) contained_in_sequence View Maps
Maize - AGI FPC Oct 2004 - ctg313 SOG0477 OVERGO 368 - 380 (bands) contained_in_sequence View Maps
Maize - AGI FPC Oct 2004 - ctg309 SOG0477 OVERGO 1,740 - 1,769 (bands) contained_in_sequence View Maps
Maize - AGI FPC Oct 2004 - ctg734 SOG0477 OVERGO 233 - 265 (bands) contained_in_sequence View Maps
Maize - FPC maize May 2006 - ctg323 SOG0477 OVERGO 385 (bands) contained_in_sequence View Maps
AA661457 EST 59,061,812 - 59,062,107 Maize - UMC 1998 - 6 csu809 RFLP 28.8 (cM) contained_in_sequence View Maps
BE512628 EST 39,014,443 - 39,014,484 No other positions
BE519068 EST 14,472,581 - 14,472,683 No other positions
BE519188 EST 3,166,031 - 3,175,394 No other positions
BE519356 EST 57,129,699 - 57,129,983 No other positions
BE530961 EST 2,644,361 - 2,646,208 No other positions
BE552919 EST 3,166,031 - 3,175,309 No other positions
BE553012 EST 4,147,638 - 4,147,699 Maize - AGI FPC Oct 2004 - ctg208 SOG5867 OVERGO 820 - 836 (bands) contained_in_sequence View Maps
Maize - AGI FPC Oct 2004 - ctg58 SOG5867 OVERGO 267 - 288 (bands) contained_in_sequence View Maps
Maize - FPC maize May 2006 - ctg67 SOG5867 OVERGO 277 (bands) contained_in_sequence View Maps
Maize - AGI FPC Oct 2004 - ctg279 SOG5867 OVERGO 114 - 146 (bands) contained_in_sequence View Maps
Maize - FPC maize May 2006 - ctg288 SOG5867 OVERGO 130 (bands) contained_in_sequence View Maps
Maize - FPC maize May 2006 - ctg212 SOG5867 OVERGO 828 (bands) contained_in_sequence View Maps
BE553012 EST 50,434,864 - 50,435,006 Maize - AGI FPC Oct 2004 - ctg208 SOG5867 OVERGO 820 - 836 (bands) contained_in_sequence View Maps
Maize - AGI FPC Oct 2004 - ctg58 SOG5867 OVERGO 267 - 288 (bands) contained_in_sequence View Maps
Maize - FPC maize May 2006 - ctg67 SOG5867 OVERGO 277 (bands) contained_in_sequence View Maps
Maize - AGI FPC Oct 2004 - ctg279 SOG5867 OVERGO 114 - 146 (bands) contained_in_sequence View Maps
Maize - FPC maize May 2006 - ctg288 SOG5867 OVERGO 130 (bands) contained_in_sequence View Maps
Maize - FPC maize May 2006 - ctg212 SOG5867 OVERGO 828 (bands) contained_in_sequence View Maps
BE553054 EST 23,294,378 - 23,294,428 Maize - IBM2 2008 Neighbors - 6 cl2242_11 Probed site 132.82 (cM) maizegdb_to_gramene View Maps
BE553054 EST 9,185,096 - 9,185,273 Maize - IBM2 2008 Neighbors - 6 cl2242_11 Probed site 132.82 (cM) maizegdb_to_gramene View Maps
BE553152 EST 10,985,082 - 10,985,362 No other positions
BE575037 EST 29,066,736 - 29,066,788 Maize - FPC maize May 2006 - ctg296 si946090E04_ov OVERGO 668 (bands) contained_in_sequence View Maps
Maize - AGI FPC Oct 2004 - ctg134 si946090E04 EST 207 - 218 (bands) Marker Identity View Maps
Maize - AGI FPC Oct 2004 - ctg287 si946090E04 EST 650 - 687 (bands) Marker Identity View Maps
Maize - FPC maize May 2006 - ctg142 si946090E04_ov OVERGO 216 (bands) contained_in_sequence View Maps
BE591208 EST 45,535,975 - 45,536,069 Wheat - wEST 2003 - 4A 4AS3-0.76-1.00 Breakpoint Interval -1 - -0.76 (Arm fraction) Wheat EST Breakpoint Interval View Maps
Wheat - wEST 2003 - 4B 4BL5-0.86-1.00 Breakpoint Interval 0.86 - 1 (Arm fraction) Wheat EST Breakpoint Interval View Maps
Wheat - wEST 2003 - 4D 4DL13-0.56-0.71 Breakpoint Interval 0.56 - 0.71 (Arm fraction) Wheat EST Breakpoint Interval View Maps
BE591466 EST 12,804,001 - 12,804,334 Wheat - wEST 2003 - 3B C-3BS1-0.33 Breakpoint Interval -0.33 (Arm fraction) Wheat EST Breakpoint Interval View Maps
Wheat - IWGSC Physical 3B - 3B BE591466-3B EST 234,366,185 (bp) Marker Identity View Maps
Wheat - wEST 2003 - 3D 3DS3-0.24-0.55 Breakpoint Interval -0.55 - -0.24 (Arm fraction) Wheat EST Breakpoint Interval View Maps
Wheat - wEST 2003 - 3A C-3AS2-0.23 Breakpoint Interval -0.23 (Arm fraction) Wheat EST Breakpoint Interval View Maps
BE600323 EST 22,957,288 - 22,957,772 Sorghum - TAMU FPC 2004 - ctg424 BE600323 EST 27 - 40 (bands) Marker Identity View Maps
BE607355 EST 18,961,699 - 18,961,773 No other positions
BE607355 EST 8,195,998 - 8,196,069 No other positions
BE636979 EST 16,952,560 - 16,952,626 Wheat - wEST 2003 - 3D 3DL2-0.27-0.81 Breakpoint Interval 0.27 - 0.81 (Arm fraction) Wheat EST Breakpoint Interval View Maps
Wheat - wEST 2003 - 3B 3BL2-0.22-0.50 Breakpoint Interval 0.22 - 0.5 (Arm fraction) Wheat EST Breakpoint Interval View Maps
Wheat - wEST 2003 - 3A 3AL3-0.42-0.78 Breakpoint Interval 0.42 - 0.78 (Arm fraction) Wheat EST Breakpoint Interval View Maps
BE639443 EST 52,130,234 - 52,130,423 No other positions
BE639871 EST 50,467,518 - 50,467,764 No other positions
BE639987 EST 51,373,340 - 51,373,677 No other positions
CO435637 EST 496,188 - 502,054 No other positions