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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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Map Set Oryza sativa japonica-Gramene Annot Seq 2009
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Maps Chr. 10
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Feature Types:
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Correspondence		 Always Display
EST
EST Cluster
Gene
Gene Prediction
Genomic DNA
GSS
mRNA
OVERGO
QTL
RFLP
SSR
STS
Synteny block
Other
 
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Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
IAGP
Marker Identity
ISS
Wheat EST Breakpoint Interval
Amplified segment
Maize bin marker
centromeric_marker
Clone end
Collinear block
Constituent clone
contained_in_sequence
EST cluster
hybridisation
maizegdb_to_gramene
Mapped contig to clone
mate_pair
qtl_marker
related_probe
related_sequence
Shared sequence
Shared synonym
Source sequence
Subclone
Synteny
Synteny block
 
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View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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Sanity Check:		 No Yes
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Map Details

Map Type: Sequence [ View Map Type Info ]
Map Set Name: Oryza sativa japonica - Gramene Annotated Nipponbare Sequence 2009 [ View Map Set Info ]
Map Name: Chr. 10
Map Start: 1 bp
Map Stop: 23,134,516 bp
Features by Type:
989 EST
1,033 EST Cluster
12 Gene
3 Gene Prediction
31 Genomic DNA
10 GSS
405 mRNA
15 OVERGO
376 QTL
363 RFLP
1,083 SSR
6 STS
23 Synteny block
4,349 Total

Map Features

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Items 1 to 25 of 4,349.       of 174 | Next
Oryza sativa japonica - Gramene Annotated Nipponbare Sequence 2009 - Chr. 10
(Click headers to resort)		 Comparative Maps
Feature Type Position (bp) Map Feature Type Position Evidence Actions
RM24915 SSR 1,507,333 - 1,507,922 No other positions
RM24916 SSR 1,507,331 - 1,507,922 No other positions
RM25554 SSR 17,528,783 - 17,529,145 No other positions
RM25556 SSR 17,551,271 - 17,551,706 No other positions
RM25559 SSR 17,565,996 - 17,566,223 No other positions
RM25560 SSR 17,621,192 - 17,621,739 No other positions
RM25293 SSR 11,746,895 - 11,747,280 No other positions
RM25294 SSR 11,762,044 - 11,762,210 No other positions
RM25295 SSR 11,839,528 - 11,839,682 No other positions
RM25296 SSR 11,887,357 - 11,887,638 No other positions
RM25298 SSR 11,939,014 - 11,939,444 No other positions
RM25299 SSR 11,939,012 - 11,939,445 No other positions
RM25300 SSR 11,943,665 - 11,944,129 No other positions
RM24865 SSR 158,453 - 158,648 No other positions
RM24866 SSR 185,017 - 185,359 No other positions
RM24867 SSR 187,551 - 187,892 No other positions
RM24872 SSR 286,057 - 286,230 No other positions
RM24873 SSR 287,399 - 287,759 No other positions
RM24874 SSR 292,472 - 292,712 No other positions
RM24875 SSR 297,244 - 297,442 No other positions
RM496 SSR 22,430,134 - 22,430,319 Oryza sativa - Cornell IR64/IRG105 QTL 2003 - 10 AQEE047 QTL 114.6 (cM) qtl_marker View Maps
Oryza sativa - CNHAU Zhe/IRAT QTL 2006 - 10 RM496 SSR 79 (cM) Marker Identity View Maps
Oryza sativa indica x Oryza nivara - USMSU CL16/80470 QTL 2006 - 10 EQC0037 QTL 70 - 80 (cM) qtl_marker View Maps
Oryza sativa indica x Oryza nivara - USMSU CL16/80470 QTL 2006 - 10 RM496 SSR 80 (cM) Marker Identity View Maps
Oryza sativa - Cornell IR64/IRG105 QTL 2003 - 10 RM496 SSR 114.6 (cM) Marker Identity View Maps
Oryza sativa - Cornell IR64/IRG105 QTL 2003 - 10 AQED025 QTL 110.7 - 126.7 (cM) qtl_marker View Maps
Oryza sativa - Cornell IR64/Azu DH QTL 2001 - 10 AQGM012 QTL 70.8 - 118.3 (cM) qtl_marker View Maps
Oryza sativa - Cornell SSR 2001 - 10 RM496 SSR 113 (cM) Marker Identity View Maps
Oryza sativa - Cornell IR64/Azu DH QTL 2001 - 10 RM496 SSR 113 (cM) Marker Identity View Maps
RM6960 SSR 22,462,664 - 22,463,008 No other positions
RM25885 SSR 22,479,377 - 22,479,469 No other positions
RM6160 SSR 22,496,015 - 22,496,208 No other positions
RM25887 SSR 22,497,475 - 22,497,673 No other positions