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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Sorghum-Sorghum bicolor JGI8X 2007
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Chr. 1
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
EST
EST Cluster
Gene Prediction
Genomic DNA
GSS
mRNA
OVERGO
Synteny block
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
IAGP
Marker Identity
ISS
Wheat EST Breakpoint Interval
Amplified segment
Maize bin marker
centromeric_marker
Clone end
Collinear block
Constituent clone
contained_in_sequence
EST cluster
hybridisation
maizegdb_to_gramene
Mapped contig to clone
mate_pair
qtl_marker
related_probe
related_sequence
Shared sequence
Shared synonym
Source sequence
Subclone
Synteny
Synteny block
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Sequence [ View Map Type Info ]
Map Set Name: Sorghum - Sorghum bicolor JGI8X 2007 [ View Map Set Info ]
Map Name: Chr. 1
Map Start: 1
Map Stop: 73,836,522
Features by Type:
32,041 EST
11,750 EST Cluster
4,244 Gene Prediction
52 Genomic DNA
84 GSS
18,168 mRNA
221 OVERGO
51 Synteny block
66,611 Total

Map Features

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Items 1 to 25 of 66,611.       of 2,665 | Next
Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 1
(Click headers to resort)		 Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
Sb01g000200 Gene Prediction 2,164 - 2,829 No other positions
Sb01g000210 Gene Prediction 11,418 - 14,814 No other positions
Sb01g000220 Gene Prediction 24,840 - 42,442 No other positions
Sb01g000230 Gene Prediction 60,122 - 63,495 No other positions
Sb01g000240 Gene Prediction 63,649 - 69,514 No other positions
Sb01g000250 Gene Prediction 79,810 - 81,660 No other positions
Sb01g000255 Gene Prediction 82,098 - 107,334 No other positions
Sb01g000260 Gene Prediction 110,179 - 112,514 No other positions
Sb01g000270 Gene Prediction 112,974 - 116,051 No other positions
Sb01g000280 Gene Prediction 116,303 - 136,465 No other positions
Sb01g000290 Gene Prediction 155,165 - 155,581 No other positions
Sb01g000300 Gene Prediction 156,091 - 162,151 No other positions
Sb01g000310 Gene Prediction 162,795 - 167,954 No other positions
Sb01g000340 Gene Prediction 212,148 - 213,606 No other positions
Sb01g000350 Gene Prediction 217,569 - 220,331 No other positions
Sb01g000352 Gene Prediction 246,149 - 247,132 No other positions
Sb01g000355 Gene Prediction 251,508 - 255,065 No other positions
Sb01g000365 Gene Prediction 261,854 - 264,081 No other positions
Sb01g000370 Gene Prediction 272,642 - 276,458 No other positions
Sb01g000380 Gene Prediction 278,678 - 282,613 No other positions
Sb01g000390 Gene Prediction 282,841 - 286,296 No other positions
Sb01g000400 Gene Prediction 291,268 - 298,468 No other positions
Sb01g000410 Gene Prediction 298,658 - 299,952 No other positions
Sb01g000420 Gene Prediction 300,949 - 306,353 No other positions
Sb01g000440 Gene Prediction 336,344 - 337,798 No other positions